View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_3 (Length: 652)
Name: NF18304_low_3
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 19 - 640
Target Start/End: Original strand, 11133700 - 11134320
Alignment:
| Q |
19 |
ctgactttcataatggtaacaaggaagctgattcgatgcctgtttttaaccctttggctgcaagagctgcttccattagtctatcatcctttggattagg |
118 |
Q |
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| T |
11133700 |
ctgactttcataatggtaacaaggaagctgattcgatgcctgtttttaaccctttggctggaagagctgcttccattagtctatcatcctttggattagg |
11133799 |
T |
|
| Q |
119 |
tggcccatttaattttggggatttttctgagaaatggaagaaacagaagatatctgaatcatcaaacaaaaaggaatattcgtctcaggtaaaatcagtt |
218 |
Q |
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| T |
11133800 |
tggcccatttaattttggggatttttctgagaaatggaagaaacagaagaattctgaatcatcaaacaaaaaggaatattcgtctcaggtaaaatcagtt |
11133899 |
T |
|
| Q |
219 |
tcttgatgccagcttttccannnnnnngatattaacacatgcttaggagtttgtttagcaaaagggaaatccattgtgaaatttaacgcctctgtatgca |
318 |
Q |
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| T |
11133900 |
tcttgatgccagcttttccatttttttgatattaacacatgcttaggagtttgtttagcaaaagggaaatccattgtgaaatttaacgcctctgcatgca |
11133999 |
T |
|
| Q |
319 |
attagttcctggtaggatacatgtaatgtggttatgaacctaatatattctagtcgtcttcattttgatttacacccaaagtcccaaacaattagcaata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11134000 |
attagttcctggtaggatacatgtaatgtggttatgaacctaatatattctagtcgtcttcattttgatttacacccaaagtcccaaacaattagcaata |
11134099 |
T |
|
| Q |
419 |
attttgctgtcacctgttgtggatcacagggcaggtttcaatatacttaacgttttttcttttctgctgcctattaattatttaaacctttgaaacatat |
518 |
Q |
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| T |
11134100 |
attttgctgtca-ctgttgtggatcacagggcaggtttgaatatacttaacgttttttcttttctgctgcctattaattatttaaacctttgaaacatat |
11134198 |
T |
|
| Q |
519 |
ttagtttcattcaatatgctcagtgtatgttaggtcatttggttccacgtttgtaggagaggcaaaattgattccggaggtgtggaattgatttgacatg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11134199 |
ttagtttcattcaatatgctcagtgtatgttaggtcatttggttccacgtttgtaggagaggcaaaattgataccggaggtgtggaattgatttgacatg |
11134298 |
T |
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| Q |
619 |
tttagattttctctagtagaat |
640 |
Q |
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||| ||||||||| |||||||| |
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| T |
11134299 |
tttggattttctcgagtagaat |
11134320 |
T |
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