View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_31 (Length: 245)
Name: NF18304_low_31
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 26700513 - 26700294
Alignment:
| Q |
10 |
catcatcattctccctctcagttgaaaaattcgaagacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700513 |
catcatcattctccctctcagttgaaaaattcgaagatgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgc |
26700414 |
T |
|
| Q |
110 |
ttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700413 |
ttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgc |
26700314 |
T |
|
| Q |
210 |
tcaacattttcccttcttaa |
229 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
26700313 |
tcaacactttcccttcttaa |
26700294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 26677340 - 26677124
Alignment:
| Q |
10 |
catcatcattctccctctcagttgaaaaattcgaagacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgc |
109 |
Q |
| |
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|||||||||||||||||||||| |||||| |||| | ||||||||| | ||||| ||||||||||| || ||||| || || | || || |||||||| |
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| T |
26677340 |
catcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaaggtacatttaccgcaggcttttattccgtcggtgaaaatgc |
26677241 |
T |
|
| Q |
110 |
ttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgc |
209 |
Q |
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|||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26677240 |
ttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgc |
26677141 |
T |
|
| Q |
210 |
tcaacattttcccttct |
226 |
Q |
| |
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|||||| |||||||||| |
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| T |
26677140 |
tcaacactttcccttct |
26677124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 26688750 - 26688966
Alignment:
| Q |
10 |
catcatcattctccctctcagttgaaaaattcgaagacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgc |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| | ||||||||| | ||||| ||||||||||| || ||||| || || | || || |||||||| |
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| T |
26688750 |
catcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaaggtacatttaccgcaggcttttattccgtcggtgaaaatgc |
26688849 |
T |
|
| Q |
110 |
ttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgc |
209 |
Q |
| |
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|||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26688850 |
ttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttgtttggatggcaaatcgtgaccaaccagttaacggaaaacgc |
26688949 |
T |
|
| Q |
210 |
tcaacattttcccttct |
226 |
Q |
| |
|
|||||| |||||||||| |
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| T |
26688950 |
tcaacactttcccttct |
26688966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 26752838 - 26752687
Alignment:
| Q |
75 |
ttcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttggg |
174 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
26752838 |
ttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttgga |
26752739 |
T |
|
| Q |
175 |
tggcaaatcgtgaccaaccagttaacggaaaacgctcaacattttcccttct |
226 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
26752738 |
tggcaaatcgtgaccaaccagttaatggaaaacgctcaacactttcccttct |
26752687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 26692902 - 26693118
Alignment:
| Q |
10 |
catcatcattctccctctcagttgaaaaattcgaagacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgc |
109 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||| || |||||| | ||||| ||||| |||||||| || ||||| || || || || |||||||| |
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| T |
26692902 |
catcatcattctctctctcggttgaaaaacacgaagaagatattataatatcaccaaaaggcacattcactgcgggtttttatcccgtaggtgaaaatgc |
26693001 |
T |
|
| Q |
110 |
ttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgc |
209 |
Q |
| |
|
|||||| || || ||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
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| T |
26693002 |
ttattcattcgccatatggttcactcaaaaacacaaaaacctcgccaacgctaccgttgtttggatggcaaatcgtgaccaacctgttaacggaaaatgc |
26693101 |
T |
|
| Q |
210 |
tcaacattttcccttct |
226 |
Q |
| |
|
|||| | |||||||||| |
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| T |
26693102 |
tcaagactttcccttct |
26693118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 26715653 - 26715466
Alignment:
| Q |
42 |
gaagacgacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaac |
141 |
Q |
| |
|
||||| ||| ||||||||||||| |||| |||||||| ||||| || || || || | |||||||||||||| || || ||||||||||| ||||||| |
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| T |
26715653 |
gaagaagacgttatagtctcacccgaaggcacattcaccgcaggcttttatccggtacgtgaaaatgcttattcattcgccatatggttcactcaaaaac |
26715554 |
T |
|
| Q |
142 |
acaaaaatctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgctcaacattttcccttcttaat |
230 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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| T |
26715553 |
acaaaaacctcaccaatgctaccgttgtttggatggcaaatcgtgaccaaccagttaacgg-aaacgctcgacactttcccttcttaat |
26715466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 52 - 230
Target Start/End: Complemental strand, 26738883 - 26738705
Alignment:
| Q |
52 |
ttatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaaatct |
151 |
Q |
| |
|
|||| |||||||| ||||| |||||||| || || || || ||||| || |||||||||||||| || || ||||||||||| |||||||||||||| || |
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|
| T |
26738883 |
ttattgtctcacccaaaggcacattcaccgcgggcttttatcctgtaggcgaaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacct |
26738784 |
T |
|
| Q |
152 |
caacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgctcaacattttcccttcttaat |
230 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||| |
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|
| T |
26738783 |
caccaatgctaccgttgtttggatggcaaatcgtgaacagccagtaaacggaaaacgctcgacactttcccttcttaat |
26738705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 26745922 - 26745744
Alignment:
| Q |
48 |
gacattatagtctcacctaaaggtacattcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaa |
147 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| || ||||| || || || || |||||||||||||| || || ||||||||||| ||||||||||||| |
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|
| T |
26745922 |
gacattatagtctcacccaaaggcacattcaccgcgggtttttatcccgtaggtgaaaatgcttattcattcgccatatggttcactcaaaaacacaaaa |
26745823 |
T |
|
| Q |
148 |
atctcaacaacgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgctcaacattttcccttct |
226 |
Q |
| |
|
| || ||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
26745822 |
acctttccaatcctaccgttgtttggatggctaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttct |
26745744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 26735522 - 26735450
Alignment:
| Q |
158 |
cgctaccgttgtttgggtggcaaatcgtgaccaaccagttaacggaaaacgctcaacattttcccttcttaat |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
26735522 |
cgctaccgttgtttggatggcaaatcgtgatcaaccagttaatggaaaacgctcaacactttcccttcttaat |
26735450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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