View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18304_low_35 (Length: 226)

Name: NF18304_low_35
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18304_low_35
NF18304_low_35
[»] chr7 (4 HSPs)
chr7 (137-214)||(37961463-37961540)
chr7 (15-73)||(37961603-37961661)
chr7 (15-73)||(46205841-46205899)
chr7 (15-72)||(29772428-29772485)
[»] chr3 (2 HSPs)
chr3 (15-73)||(38360182-38360240)
chr3 (35-73)||(26813964-26814002)
[»] chr4 (2 HSPs)
chr4 (14-73)||(4641610-4641669)
chr4 (26-73)||(4734136-4734183)
[»] chr8 (1 HSPs)
chr8 (27-73)||(28321033-28321079)
[»] chr6 (1 HSPs)
chr6 (27-73)||(14113396-14113442)
[»] scaffold0227 (1 HSPs)
scaffold0227 (15-73)||(5053-5111)
[»] chr2 (2 HSPs)
chr2 (26-73)||(33425122-33425169)
chr2 (35-73)||(40611648-40611686)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 37961540 - 37961463
Alignment:
Q  137 tatgttcatatatcattcctctaacataaatgtacaaaaattcaggatctaggagtattgaatgaaccaagtcatgat 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37961540 tatgttcatatatcgttcctctaacataaatgtacaaaaattcaggatctaggagtattgaatgaaccaaatcatgat 37961463  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 37961661 - 37961603
Alignment:
Q  15 atatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37961661 atatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 37961603  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 46205841 - 46205899
Alignment:
Q  15 atatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||| ||||||||||||||| | |||||||| | ||| | |||||||||||||||    
T  46205841 atatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacg 46205899  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 29772485 - 29772428
Alignment:
Q  15 atatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcac 72  Q
    |||||||| | || ||||| |||| |||||||||||| ||||| ||||||||||||||    
T  29772485 atatgtacaatcagaattgaacaacttatgcaacaacttttgatattgtgaggagcac 29772428  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 38360182 - 38360240
Alignment:
Q  15 atatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38360182 atatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 38360240  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 26813964 - 26814002
Alignment:
Q  35 acaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  26813964 acaatttatgcaacaacctttgacaatgtgagaagcacg 26814002  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 4641610 - 4641669
Alignment:
Q  14 aatatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  4641610 aatatgtacaaccaaaattggataatttatgcaacaacctttgacattgtgagaagcacg 4641669  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 4734136 - 4734183
Alignment:
Q  26 caaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||| ||||||||||||||||| ||| | |||||||||||||||    
T  4734136 caaaattgaacaatttatgcaacaacttttaatattgtgaggagcacg 4734183  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 28321033 - 28321079
Alignment:
Q  27 aaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  28321033 aaaattggacaacttatgcaacaacctttgactttgtgaggagcacg 28321079  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 14113442 - 14113396
Alignment:
Q  27 aaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14113442 aaaattggataatttatgcaacaacctttgatattgtgaggagcacg 14113396  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 5053 - 5111
Alignment:
Q  15 atatgtacgaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||||||| || |||||||||||||||||||||||| |||||| ||||| |||| ||||    
T  5053 atatgtacaactaaaattggacaatttatgcaacaatctttgatattgtaaggaacacg 5111  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 33425122 - 33425169
Alignment:
Q  26 caaaattggacaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    ||||||||||||| ||||||||||| |||||| |||||||| ||||||    
T  33425122 caaaattggacaacttatgcaacaatctttgatattgtgagaagcacg 33425169  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 40611686 - 40611648
Alignment:
Q  35 acaatttatgcaacaacctttgacattgtgaggagcacg 73  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  40611686 acaacttatgcaacaacctttgacaatgtgaggagcacg 40611648  T

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