View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18304_low_36 (Length: 225)

Name: NF18304_low_36
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18304_low_36
NF18304_low_36
[»] chr1 (2 HSPs)
chr1 (97-210)||(4338501-4338614)
chr1 (1-97)||(4338649-4338745)
[»] chr6 (3 HSPs)
chr6 (46-97)||(4246411-4246462)
chr6 (123-156)||(32386693-32386726)
chr6 (113-165)||(32386220-32386270)
[»] chr7 (1 HSPs)
chr7 (109-155)||(1431425-1431470)
[»] chr8 (2 HSPs)
chr8 (113-153)||(6918941-6918980)
chr8 (111-155)||(29170059-29170102)
[»] chr5 (1 HSPs)
chr5 (99-155)||(20982242-20982297)
[»] chr4 (1 HSPs)
chr4 (99-147)||(2980578-2980625)
[»] chr2 (2 HSPs)
chr2 (123-167)||(11393496-11393539)
chr2 (123-167)||(11410157-11410200)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 4338614 - 4338501
Alignment:
Q  97 tctgttctagacataacttatacataaagcacttatatgataaacacttatactataagttgcttaattaaacattaagtagttcatccaaagtcaaaac 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4338614 tctgttctagacataacttatacataaagcacttatatgataaacacttatactataagttgcttaattaaacattaagtagttcatccaaagtcaaaac 4338515  T
Q  197 attgcctaaataat 210  Q
    ||||||||||||||    
T  4338514 attgcctaaataat 4338501  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4338745 - 4338649
Alignment:
Q  1 catattcaaacaacttatcttataagcaacttattatttgagttattttcaaattatttctatatcctctccataatagcttattaaaacagcttat 97  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4338745 catattcaaacaacttatcttataagcaacttatcatttgagttattttcaacttatttctatatcctctccataatagcttattaaaacagcttat 4338649  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 4246462 - 4246411
Alignment:
Q  46 ttttcaaattatttctatatcctctccataatagcttattaaaacagcttat 97  Q
    ||||||| |||||| ||||| |||||||||||||||||| ||||||||||||    
T  4246462 ttttcaacttatttttatatgctctccataatagcttatgaaaacagcttat 4246411  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 32386693 - 32386726
Alignment:
Q  123 aagcacttatatgataaacacttatactataagt 156  Q
    |||||||||||||||||||| |||||||||||||    
T  32386693 aagcacttatatgataaacatttatactataagt 32386726  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 32386220 - 32386270
Alignment:
Q  113 cttatacataaagcacttatatgataaacacttatactataagttgcttaatt 165  Q
    ||||||||||| |||||||||||||||||  |||||||||||| |||||||||    
T  32386220 cttatacataa-gcacttatatgataaacttttatactataag-tgcttaatt 32386270  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 1431425 - 1431470
Alignment:
Q  109 ataacttatacataaagcacttatatgataaacacttatactataag 155  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||    
T  1431425 ataacttatacataaa-cacttatatgataagcacttatgctataag 1431470  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 6918980 - 6918941
Alignment:
Q  113 cttatacataaagcacttatatgataaacacttatactata 153  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  6918980 cttatacataa-gcacttatatgataaacacttatgctata 6918941  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 29170059 - 29170102
Alignment:
Q  111 aacttatacataaagcacttatatgataaacacttatactataag 155  Q
    ||||||||||||| |||||||||||||||||||  ||||||||||    
T  29170059 aacttatacataa-gcacttatatgataaacacacatactataag 29170102  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 20982242 - 20982297
Alignment:
Q  99 tgttctagacataacttatacataaagcacttatatgataaacacttatactataag 155  Q
    |||| |||| ||| ||||||||||| ||||||||||||||| ||||||| |||||||    
T  20982242 tgttatagaaatagcttatacataa-gcacttatatgataagcacttatgctataag 20982297  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 2980578 - 2980625
Alignment:
Q  99 tgttctagacataacttatacataaagcacttatatgataaacacttat 147  Q
    |||| |||| ||| ||||||||||| |||||||||||||||||||||||    
T  2980578 tgttatagaaatagcttatacataa-gcacttatatgataaacacttat 2980625  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 11393496 - 11393539
Alignment:
Q  123 aagcacttatatgataaacacttatactataagttgcttaattaa 167  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||    
T  11393496 aagcacttatatgataaacacttgtgctataag-tgcttaattaa 11393539  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 11410157 - 11410200
Alignment:
Q  123 aagcacttatatgataaacacttatactataagttgcttaattaa 167  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||    
T  11410157 aagcacttatatgataaacacttgtgctataag-tgcttaattaa 11410200  T

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