View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_38 (Length: 220)
Name: NF18304_low_38
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 51718444 - 51718611
Alignment:
| Q |
43 |
aattgtatttctacaatattttgagacaactctctcatacattct------ctttgtgtttttacactatcttcatctctctattattttttatcaataa |
136 |
Q |
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| T |
51718444 |
aattgtatttttacaatattttgagacaactctttcatacattctctttctctttgtgcttttacattatcttcatctctctattattttttatcaataa |
51718543 |
T |
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| Q |
137 |
aaagagaaagaatgttgtctagggattgtagtcgtataaatatcgttactcaaaatgaaagtttaaat |
204 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51718544 |
aaagagagagaatgttgtctagggattgtagtcgtataaatatcgttactcaaaatgaaagtttaaat |
51718611 |
T |
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