View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_39 (Length: 206)
Name: NF18304_low_39
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 25306780 - 25306934
Alignment:
| Q |
34 |
ccactgttaagattgattttcatcaaggagcctaagtatgtttatagattttcacttatccttgaaaaaatatatataaaataacttacttgaatgttgg |
133 |
Q |
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| T |
25306780 |
ccactgttaagattgattttcattaaggagcctaagtatgtttatagattttcacttattcttgaaaaaaaaaataaaacataacttacttgaatgttgg |
25306879 |
T |
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| Q |
134 |
gctgtttagcatttagaaattctgaaaccaatgacttgttatctggaggccaaca |
188 |
Q |
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| T |
25306880 |
gttgtttagcatttagaaattctgaaaccaatgacttgttatatggaggccaaca |
25306934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 25278746 - 25278841
Alignment:
| Q |
72 |
tgtttatagattttcacttatccttgaaaaaatatatataaaataacttacttgaatgttgggctgtttagcatttagaaattctgaaaccaatgactt |
170 |
Q |
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| T |
25278746 |
tgtttatagattttgacttattcttgaaaaa---tataaaacataacttacttgaatgttgggctttttagcattttgaaattctgaaaccaatgactt |
25278841 |
T |
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