View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_4 (Length: 646)
Name: NF18304_low_4
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 124 - 457
Target Start/End: Complemental strand, 21077097 - 21076764
Alignment:
| Q |
124 |
cttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
223 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21077097 |
cttagaagttgtgtcccaatccatttaagtattttttgcatttagttaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
21076998 |
T |
|
| Q |
224 |
ttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctcttannnnnnngtctacctgaccatacatgtttt |
323 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
21076997 |
ttccattaactgtgagatttttcaatatggtgtctgaaataccctctcaaattccgcacaatttctcttatttttttgtctacctggccatacatgtttt |
21076898 |
T |
|
| Q |
324 |
ggaaagcttcttcagactttagctataatcagcttaattgtgaacgttttgacaatcttacaaagaccacctttaaatgctatatttcgttatatggttg |
423 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
21076897 |
ggaaagcttcttcaaactttagctatattcagcttaattgtgaacgatttcacaatcttacaaagaccacctttaaacgctatatttcgctatatggttg |
21076798 |
T |
|
| Q |
424 |
taaacacatcatgctatgttcaaaacacaaaggg |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
21076797 |
taaacacatcatgctatgttcaaaacacaaaggg |
21076764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 123 - 457
Target Start/End: Complemental strand, 21023175 - 21022832
Alignment:
| Q |
123 |
acttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacag |
222 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
21023175 |
acttagaagttgtgccccaatccatttaagtatttcctgcatttagctaattgattgatcgggtttaaaacttaagttttatttaactgggctagtacag |
21023076 |
T |
|
| Q |
223 |
tttccacta---actgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctcttannnnnnn-----gtctacctgaccat |
314 |
Q |
| |
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| || ||| ||||||||||||| ||||| |||| |||||||| |||||| |||| |||||||||||||| ||||| ||| |||| |
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| T |
21023075 |
tcccccctactcactgtgagattttccaataaggtgcctgagatactctctcaaattctgcacaatttctctttttttttttttttgtctatctggccat |
21022976 |
T |
|
| Q |
315 |
acatgttttggaaagcttctt-cagactttagctataatcagcttaattgtgaacgttttgacaatcttacaaagaccacctttaaatgctatatttcgt |
413 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
21022975 |
acatgttttggaaagcttctttcagaatttagctataatcaacttaattgttaacgatttgacaatcttacaaagacaacctttaaaccctatatttcgt |
21022876 |
T |
|
| Q |
414 |
tatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21022875 |
tatatggttgtaaacacatcatgctatgttcaaaacacaaaggg |
21022832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 455 - 628
Target Start/End: Complemental strand, 21076676 - 21076503
Alignment:
| Q |
455 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgactgtgagcttctccggcacaga |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21076676 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgaccgtgagcttctccggcacaga |
21076577 |
T |
|
| Q |
555 |
gaagatctatcagaacttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcataagctaaa |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21076576 |
gaagatctatcagaacttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcataagctaaa |
21076503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 455 - 621
Target Start/End: Complemental strand, 21022744 - 21022576
Alignment:
| Q |
455 |
gggacagagcttacaataatctaagttattgttaggatacattattcccatgatgatggattagtccagtcccagtgactgtgagcttct-ccggcacag |
553 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
21022744 |
gggacagagcttacagtaatctaagttattgctaggatacattattttgatgatgatggattagtccagtcccagtgactatgagcttctcccgacacag |
21022645 |
T |
|
| Q |
554 |
agaagatctatcagaa-cttaaggttatcatataacaaattaacaagtaacaaaatagaggttatcata |
621 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21022644 |
agaagatctatcagaagcttaaggttatcatacaacaaattaacaagtaacaaaatagaggttatcata |
21022576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 21023529 - 21023464
Alignment:
| Q |
63 |
tttgttaccctaatgataacctgtgtgcataatcaaaacaagctattagagggaagtgggacttag |
128 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||| | | |||||||||| ||||| |
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|
| T |
21023529 |
tttgttaccctaatgataacctatgtgcatactcaaaacaagctactggggggaagtggggcttag |
21023464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 21024349 - 21024301
Alignment:
| Q |
10 |
aatatgttgtgatttgaagtagtttgatgcatgatagaacaggtagaag |
58 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
21024349 |
aatattttgtgattttaagtagtttgatgcatgatataacatgtagaag |
21024301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 21806803 - 21806760
Alignment:
| Q |
234 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattc |
277 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| |||||| |
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| T |
21806803 |
tgtgatattttttaatatggtgtctgagatatcctcttagattc |
21806760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 33699737 - 33699824
Alignment:
| Q |
206 |
taactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctta |
293 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |
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|
| T |
33699737 |
taactaggctagtatggtctccactaactgtgagattttccaatatggtgtctgagataccctctcagattctgcacactttctctta |
33699824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 260759 - 260701
Alignment:
| Q |
234 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
292 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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|
| T |
260759 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
260701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 655162 - 655220
Alignment:
| Q |
234 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
292 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
|
|
| T |
655162 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
655220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 840897 - 840955
Alignment:
| Q |
234 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
292 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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|
| T |
840897 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
840955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 25427493 - 25427550
Alignment:
| Q |
207 |
aactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagata |
264 |
Q |
| |
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|||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||||||| |
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|
| T |
25427493 |
aactgggctagtccagtctccactgactttgagatttttcaatctggtgcttgagata |
25427550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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