View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_40 (Length: 205)
Name: NF18304_low_40
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 55636724 - 55636555
Alignment:
| Q |
19 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttat |
118 |
Q |
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| T |
55636724 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcatcaacaagactacaatggttat |
55636625 |
T |
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| Q |
119 |
tattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatca |
188 |
Q |
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| T |
55636624 |
tattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatgcccaaacatca |
55636555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 55619748 - 55619866
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
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| T |
55619748 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaacaacat |
55619845 |
T |
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| Q |
150 |
gtaagcttcaatttatatgcat |
171 |
Q |
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|| ||||||||||||||||||| |
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| T |
55619846 |
gt-agcttcaatttatatgcat |
55619866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 55658098 - 55658216
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
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| T |
55658098 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaacaacat |
55658195 |
T |
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| Q |
150 |
gtaagcttcaatttatatgcat |
171 |
Q |
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|| ||||||||||||||||||| |
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| T |
55658196 |
gt-agcttcaatttatatgcat |
55658216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 52983850 - 52983957
Alignment:
| Q |
70 |
ggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgc |
169 |
Q |
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| T |
52983850 |
ggtgtaacctgagaactaaatataccatcaagaagactgcaatggttactatagcaccacatctccattttaaacaacatgt-agcttcaatttatatgc |
52983948 |
T |
|
| Q |
170 |
atgtaatac |
178 |
Q |
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|||| |||| |
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| T |
52983949 |
atgtgatac |
52983957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 55664287 - 55664448
Alignment:
| Q |
24 |
aaataagggtttacggtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattg |
123 |
Q |
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|||||||||||| |||||| |||| ||||||| |||| |||||||||||||| | ||||| |||||||||||||||| |||||||||| | ||| |
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| T |
55664287 |
aaataagggtttctagtcacctaacagtccaactattactttgattggtgtaaccagagaactaaatatatcaccaacaaagctacaatggtaactat-- |
55664384 |
T |
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| Q |
124 |
caccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatca |
188 |
Q |
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| T |
55664385 |
caccacatctccatgttaaacaacgtgt-acctttgattaatatgcatgtgatacccaaacatca |
55664448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 55627052 - 55627170
Alignment:
| Q |
52 |
ccaactaatactctgattggtgt--aacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacat |
149 |
Q |
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||||||| ||||||||||||||| |||||| |||| ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
55627052 |
ccaactattactctgattggtgtgtaacctgataactaaatatatcatcaacaagactataa--gttaatattgcaccacatctccatgttaaaaaacat |
55627149 |
T |
|
| Q |
150 |
gtaagcttcaatttatatgcat |
171 |
Q |
| |
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|| |||||||| |||||||||| |
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| T |
55627150 |
gt-agcttcaaattatatgcat |
55627170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 54628409 - 54628313
Alignment:
| Q |
89 |
atatatcaccaacaagactacaatggttattattgcaccacatctccatgttaaacaacatgtaagcttcaatttatatgcatgtaatacgcaaacatca |
188 |
Q |
| |
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|||||||| || ||||| ||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| |||| |||| ||||||||| |
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| T |
54628409 |
atatatcatcagcaagagtacaatggttattattgcaccacatctccatctcaaataacatgta----gcaatttatatgtatgtgatacccaaacatca |
54628314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 9890997 - 9890864
Alignment:
| Q |
39 |
gtcaccgaacaacccaactaatactctgattggtgtaacctgtgaactgaatatatcaccaacaagactacaatggttattattgcaccacatctccatg |
138 |
Q |
| |
|
|||||| ||||| ||||||| |||| |||||||||||||| | ||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
9890997 |
gtcacctaacaatccaactattactttgattggtgtaaccagagaactaaatatatcatcaacaagactacaatagttattattgcacaacatctccatg |
9890898 |
T |
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| Q |
139 |
ttaaacaacatgtaagcttcaatttatatgcatgt |
173 |
Q |
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||||||||||||| || |||||||||||||||||| |
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| T |
9890897 |
ttaaacaacatgt-agtttcaatttatatgcatgt |
9890864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 13403078 - 13402949
Alignment:
| Q |
19 |
atggaaaataagggtttacggtcaccgaacaacccaactaatactctgattggtgta--acctgtgaactgaatatatcaccaacaagactacaatggtt |
116 |
Q |
| |
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|||||||||||||| ||| |||||| ||||| ||||| | |||||| ||||||||| ||||| ||||| |||||||| ||||||||||||||| | |
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| T |
13403078 |
atggaaaataagggctta--gtcacctaacaaaccaacaattactctaattggtgtataacctgggaactaaatatatct---acaagactacaatggct |
13402984 |
T |
|
| Q |
117 |
attattgcaccacatctccatgttaaacaacatgt |
151 |
Q |
| |
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||||||||||| |||||||||||||||| ||||| |
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| T |
13402983 |
gttattgcaccagatctccatgttaaacagcatgt |
13402949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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