View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_41 (Length: 205)
Name: NF18304_low_41
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 36433333 - 36433160
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
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| T |
36433333 |
gaaggaaccagctttgattagtttttctatcaaaaccaagcctttgatatggaagccaagtgtccgtgggataatcaaagctatcccatatgacagtttt |
36433234 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctatttatctgtg |
191 |
Q |
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| T |
36433233 |
ggttctgtttaacatcaaaacaaagtttcctatatcagatagttgagctataacgtcggtgctatttatctgtg |
36433160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 36368700 - 36368532
Alignment:
| Q |
23 |
aaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagttttggttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||| | || || || |||| |||||| |||||||||||||||||||||| | |
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| T |
36368700 |
aaccagctttgattagtttttctatcaaaaccaaccttgagatatggaagcaaggtatctgtaggatgatcaaaactttcccatatgacagttttggagc |
36368601 |
T |
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| Q |
123 |
tgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctatttatctgtg |
191 |
Q |
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| T |
36368600 |
tttttagcatcaaaacaaggtttcctatatccgatagttgagctataacgttggtgctatttatctgtg |
36368532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 36387280 - 36387126
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttct-atcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagttt |
116 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||| | ||||| || |||| ||||||||||||||||| ||||||| |
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| T |
36387280 |
gaaggaaccagctttgattagttttttttatcaaaaccaagccttagatatggaagcaaggtgtctgttggatgatcaaagctttcccataatacagttt |
36387181 |
T |
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| Q |
117 |
tggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataac |
171 |
Q |
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|||| |||||| ||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
36387180 |
tggtgttgtttatcatcaaaacaaggtttgctatatccgatagttgagctataac |
36387126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36373321 - 36373155
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| | || ||||||||||| | ||||| || |||| ||||||||||||||||| |||||||| |
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| T |
36373321 |
gaaggaaccagctttgattagtttttctattaaacccaatctttagatatggaagcaaggtgtctgttggatgatcaaagctttcccataatacagtttt |
36373222 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctattt |
184 |
Q |
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||| |||||| ||||| ||||| |||| ||| |||||||| |||||||||||| |||||||||| |
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| T |
36373221 |
ggtgttgtttatcatcagaacaaggtttgctacatccgataattgagctataaccctggtgctattt |
36373155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36411310 - 36411144
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
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|||||| ||| ||||||||| |||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||||||||| ||| |||||| |
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| T |
36411310 |
gaaggacccaactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtgggatgatcaaagctttcccagatggcagtttc |
36411211 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctattt |
184 |
Q |
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||| ||||||| ||| ||||| ||||||||||||| |||||||||||||||| | |||| ||||| |
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| T |
36411210 |
ggtgtcgtttaacctcagaacaaggtttcctatatccaatagttgagctataacattggtgttattt |
36411144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36416641 - 36416475
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
| |
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|||||| ||| ||||||||| |||||||||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||||||||| ||| |||||| |
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| T |
36416641 |
gaaggacccaactttgattaatttttctatcaaaaccaatcttttgatacggaagcattgtgtctgtgggatgatcaaagctttcccagatggcagtttc |
36416542 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctattt |
184 |
Q |
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||| ||||||| ||| ||||| ||||||||||||| |||||||||||||||| | |||| ||||| |
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| T |
36416541 |
ggtgtcgtttaacctcagaacaaggtttcctatatccaatagttgagctataacattggtgttattt |
36416475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36425476 - 36425310
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||| | || |||||||||| ||||| ||||||| ||| ||||||||||| ||| |||||| |
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| T |
36425476 |
gaaggaaccaactttgattaatttttctatcaaaaccaagctttatatatggaagcattgtgtctgtgggatgatccaagctttcccagatggcagtttc |
36425377 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataacgtcggtgctattt |
184 |
Q |
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||| ||||||| ||| ||||| ||||||||||||| |||||||||||||||| | |||| ||||| |
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| T |
36425376 |
ggtgtcgtttaacctcagaacaaggtttcctatatccaatagttgagctataacattggtgttattt |
36425310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 36397052 - 36396936
Alignment:
| Q |
29 |
ctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagttttggttctgttta |
128 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||| ||||||||||||||| ||||||||||| || |||||| |
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| T |
36397052 |
ctttgattagtttttctatcaaaaccaaacctttgatatggaaggaaggtgtctgtgggatgatcaaagctttcccaaatgacagtttttgtgttgttta |
36396953 |
T |
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| Q |
129 |
acatcaaaacaaagttt |
145 |
Q |
| |
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||||| ||||| |||| |
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| T |
36396952 |
tcatcagaacaatgttt |
36396936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 36403996 - 36403843
Alignment:
| Q |
18 |
gaaggaaccagctttgattagtttttctatcaaaaccaaccctttgatatggaagccaagtgtccgtgggataatcaaagctttcccatatgacagtttt |
117 |
Q |
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|||||||||||||||||||||||||||||| ||| || | | || ||||||||||| | ||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
36403996 |
gaaggaaccagctttgattagtttttctattaaaccctatctttagatatggaagcaaggtgtctgtgggatgatcaaagctttcccagatgacagtttt |
36403897 |
T |
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| Q |
118 |
ggttctgtttaacatcaaaacaaagtttcctatatccgatagttgagctataac |
171 |
Q |
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|| |||||| ||||| ||||| |||| |||| || |||| || |||||||| |
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| T |
36403896 |
tgtgttgtttatcatcagaacaaggtttgctatgtctgataatttcgctataac |
36403843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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