View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_5 (Length: 619)
Name: NF18304_low_5
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 41 - 601
Target Start/End: Original strand, 7421048 - 7421603
Alignment:
| Q |
41 |
acaaatgacacatttattttgggacggaaaaggtacctgattttaacatcaaagtgactttcgcatgtacatctaaaaatatttgacttaggcccaatat |
140 |
Q |
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| T |
7421048 |
acaaataacacatttattttgggacggaaaaagtacctgattttaacatcaaagtgactttcacatgtacatctaaaaatatttgacttaggcccaatat |
7421147 |
T |
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| Q |
141 |
gatccaaacctaaactatcttacaatacgatttcccgatcgcaacgaaataattatttaaaagatgaggaaacagataagcctaaaattattttagtaac |
240 |
Q |
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| T |
7421148 |
aatccaaacctaaactatcttacaatacgatttcccgatcgcaacaaaataattatttaaaagatgaggaaacggataagcctaaaattatgttagtaac |
7421247 |
T |
|
| Q |
241 |
cacccaaataccatgatgtgatatttaggaagaaaattagaattcaaccaccagcatttttgataattttatttttaaggaaagcattgtttgatttggt |
340 |
Q |
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| T |
7421248 |
cacccaaataccatgatgtgatattttggaagaaaattagaattcaaccaccagcatttttgataattttatttttaaggaaagcattgtttgatttggt |
7421347 |
T |
|
| Q |
341 |
tcatatatgttgataatttgggttcttatgcaactgcctctgttcatcgttttaaatgtttccttactatatatcttggatgaccacacttgattcattt |
440 |
Q |
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| T |
7421348 |
tc----atgtagataagttgggttctcatgcaactgcctctgttcatcgttttaaatgtttccttactatatatcttggatgaccacacttgcttcattt |
7421443 |
T |
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| Q |
441 |
atgttttccttaaacagttttatgtctccaaaagcatcgttcaccaaactagctgtcctcacgcccaaatacctcactcgaccttattggtcctatgctg |
540 |
Q |
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| T |
7421444 |
atgttttccttaaacagttttatgtctccaaaagcatcgttcaccaaactagctgtcctcacgcccaaatgcctcactcgaccttattggtcctatgctg |
7421543 |
T |
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| Q |
541 |
tgttgcatgtcaatgtacttaattaataagttcccactgtgaaactccacaacaagaacgt |
601 |
Q |
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| T |
7421544 |
tgttgcatgtc-atgtacttaattaataagttcccactgtgaaactccacaacaagaacgt |
7421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 73 - 306
Target Start/End: Original strand, 13573791 - 13574023
Alignment:
| Q |
73 |
gtacctgattttaacatcaaagtgactttcgcatgtacatctaaaaatatttgacttaggcccaatatgatcc-aaacctaaactatcttacaatacgat |
171 |
Q |
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| T |
13573791 |
gtacctgattttaacatcaaagtaacctttacatgtccatatcaaaat--ttaacttaagctcaatatgagcccaaacttaaactctcatacaatacgat |
13573888 |
T |
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| Q |
172 |
ttccc-gatcgcaacgaaataattatttaaaagatgaggaaacagataagcctaaaattattttagtaaccacccaaataccatgatgtgatatttagga |
270 |
Q |
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| T |
13573889 |
ttccctgtttgcaacaaaatcattatttcaaagatgaggaaccagataagcctata-ttacgctagtaatcacccaaatagcatgatattatattaagga |
13573987 |
T |
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| Q |
271 |
agaaaattagaattcaaccaccagcatttttgataa |
306 |
Q |
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| T |
13573988 |
agaaaattagaattcaaccaccagcatctttgataa |
13574023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 14202065 - 14202129
Alignment:
| Q |
246 |
aaataccatgatgtgatatttaggaagaaaattagaattcaaccaccagcatttttgataatttt |
310 |
Q |
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| T |
14202065 |
aaataccatgatgtcatatttaggaagaaatttagaattcaaccactagcatctttgatattttt |
14202129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 13567904 - 13567957
Alignment:
| Q |
252 |
catgatgtgatatttaggaagaaaattagaattcaaccaccagcatttttgata |
305 |
Q |
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| T |
13567904 |
catgatgtcatatttatgaagaaaattaaaattcaaccactagcatctttgata |
13567957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 3923792 - 3923733
Alignment:
| Q |
238 |
aaccacccaaataccatgatgtgatatttaggaagaaaattagaattcaaccaccagcat |
297 |
Q |
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| T |
3923792 |
aaccatccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcat |
3923733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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