View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_6 (Length: 500)
Name: NF18304_low_6
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_6 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Complemental strand, 5984873 - 5984398
Alignment:
| Q |
16 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
115 |
Q |
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| T |
5984873 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5984774 |
T |
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| Q |
116 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataattaaagagcaca |
215 |
Q |
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| T |
5984773 |
aagagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaa----taaagagcaca |
5984678 |
T |
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| Q |
216 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatgtattattattattattcatcatgttgttaacatttctgactaatggtgtatgaccaa |
315 |
Q |
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| T |
5984677 |
caaatacaaccccatcaagcaaccaagcaaaaactacaaaatg---tattattattattcatcatgttgttaacatttctgactaatggtgtatgaccaa |
5984581 |
T |
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| Q |
316 |
aaattaaccaaaatattctggatttcaannnnnnnagttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgagactatgctta |
415 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984580 |
aaattaaccaaaatattctggatttcaa--tttttagttcatcgaaaattgactatggtttcttttcaaataagatggacatggaatgagactatgctta |
5984483 |
T |
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| Q |
416 |
tgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgt |
500 |
Q |
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| T |
5984482 |
tggactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataattacacaggtctattatgagctttgt |
5984398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 5968864 - 5968684
Alignment:
| Q |
16 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
115 |
Q |
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| T |
5968864 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
5968765 |
T |
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| Q |
116 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
196 |
Q |
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| T |
5968764 |
aagagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
5968684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 8715283 - 8715463
Alignment:
| Q |
16 |
aagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaagtacaccg |
115 |
Q |
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| T |
8715283 |
aagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccg |
8715382 |
T |
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| Q |
116 |
aagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactg |
196 |
Q |
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| T |
8715383 |
aagagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgctttgaactg |
8715463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 5963738 - 5963544
Alignment:
| Q |
9 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
108 |
Q |
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| T |
5963738 |
agaaccaaaaggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtcagtaca |
5963639 |
T |
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| Q |
109 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
203 |
Q |
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| T |
5963638 |
tatactgaagagcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataa |
5963544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 5935341 - 5935147
Alignment:
| Q |
9 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
108 |
Q |
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|||| |||| |||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5935341 |
agaaccaaaaggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaacccaaagaagcttgtcagtaag |
5935242 |
T |
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| Q |
109 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataa |
203 |
Q |
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| T |
5935241 |
taaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgttgtgaactgcaaataa |
5935147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 377 - 487
Target Start/End: Complemental strand, 5968321 - 5968211
Alignment:
| Q |
377 |
cttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataaccaacttataatt |
476 |
Q |
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| T |
5968321 |
cttttcagattagttggacatagaatgaggtgatgcttatggaataagtagtcagaagaccttaatcttcttcatgcaaatccataaccaacttataatt |
5968222 |
T |
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| Q |
477 |
acacaggtcta |
487 |
Q |
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| T |
5968221 |
atacaagtcta |
5968211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 463
Target Start/End: Complemental strand, 5963326 - 5963233
Alignment:
| Q |
370 |
atggtttcttttcaaataagatggacatggaatgagactatgcttatgtactaagtagtcaaaagaccttaaccttcttcatgcaaatacataa |
463 |
Q |
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||||||||||| ||||| || |||| ||||||||| ||| || || | |||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
5963326 |
atggtttctttgcaaattagttggaaatggaatgaagtgatggttttggaataagtagtcagaagacctcaaccttcttcatgcaaatccataa |
5963233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 5628142 - 5628331
Alignment:
| Q |
9 |
agaagcaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaatccaaagaagcttgtcagtaag |
108 |
Q |
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| T |
5628142 |
agaaccaaaaggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaa |
5628241 |
T |
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| Q |
109 |
tacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgctatgaactgca |
198 |
Q |
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| T |
5628242 |
tacacggatgagcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgctgtgaactgca |
5628331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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