View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_7 (Length: 461)
Name: NF18304_low_7
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 22049767 - 22050202
Alignment:
| Q |
10 |
ataatactaaacaaattacatataattgatcatgacatgagatttgttacagacataatggtagatagatctaaacttatatgatagataacatattatt |
109 |
Q |
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| T |
22049767 |
ataatactaaacaaattacatataattgatgatgacatgagatttgttacagacataatggtagatagatccaaacttatatgacagataacatattatt |
22049866 |
T |
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| Q |
110 |
gtacttcaacacaaatatactaattgacatagattcctaaccaaatcacatttttgcaaccattataagatttgagtgattatgattgacaaatcgaaac |
209 |
Q |
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| T |
22049867 |
gcacttcaacacaaagatactaattgacatagattcataaccaaatcacatttttgcaaccattataagatttgagtgattatgattgacaaatcgaaac |
22049966 |
T |
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| Q |
210 |
ttcaaaacatctccttccttacatttgttcaatagtgtaaacaaattccagtcccttccgaattcagtccatgatttgttgcctttgttcctctttagaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
22049967 |
ttcaaaacatctccttccttacatttgttcaatagtgtaaacaaattccagtcccttccgaattcagtccatgattttttgcctttcttcctctttagaa |
22050066 |
T |
|
| Q |
310 |
ctttgcaactcaattcaaatccgtcaggtccaacaattcgcacgtagtcatatccagtgcttctcacaaagttttcaaattcagtattcaatgactaaat |
409 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
22050067 |
ctttgcaactgaattcaaatccgtcaggtccaacaattcgcacgtagtcatatccagtgcttctcacaaagtttgcaaagtcagtcttcaatgactaaat |
22050166 |
T |
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| Q |
410 |
aaagtaataaaaatatgttagattgatacttgttat |
445 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
22050167 |
aaagtaataaaaatatgttagattgatacttgttat |
22050202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 22059336 - 22059401
Alignment:
| Q |
251 |
caaattccagtcccttccgaattcagtccatgatttgttgcctttgttcctctttagaactttgca |
316 |
Q |
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| T |
22059336 |
caaattccagtcgcttccaaattaagtccatgattttctgcctttgttccttttcagaacattgca |
22059401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 31772156 - 31772103
Alignment:
| Q |
251 |
caaattccagtcccttccgaattcagtccatgatttgttgcctttgttcctctt |
304 |
Q |
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|||||||||||| ||||| || |||||||| ||| ||||||||||||||||||| |
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| T |
31772156 |
caaattccagtcacttccaaactcagtccaagatctgttgcctttgttcctctt |
31772103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 22059257 - 22059305
Alignment:
| Q |
172 |
ttataagatttgagtgattatgattgacaaatcgaaacttcaaaacatc |
220 |
Q |
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|||| |||||||| ||||||||| ||||||||| |||||||||||||| |
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| T |
22059257 |
ttattagatttgaacgattatgatcgacaaatcggaacttcaaaacatc |
22059305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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