View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_8 (Length: 456)
Name: NF18304_low_8
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 4039426 - 4039004
Alignment:
| Q |
19 |
atttgctcttccatttcctcagcaatctcaaaaggtgagtagtaactagttggagcaatatcgtcgagaaaccgaaaatcaggaacatcaacacttacgt |
118 |
Q |
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| T |
4039426 |
atttgctcttccatttcctcagcaatctcaaaaggtgagtagtaactagttggagcaatatcgtcgagaaaccgaaaatcaggaacatcaacacttacat |
4039327 |
T |
|
| Q |
119 |
cattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttgtgtcacattgtttgatttagattccatattcatttcatcctcctt |
218 |
Q |
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| T |
4039326 |
cattattgacttcctcttcaccatcttctgaattgctatcaccacttgaagtttctgtcacattgtttgatttagattccatattcatttcatcctcctt |
4039227 |
T |
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| Q |
219 |
gcagccattgttttcggttaaacacgattcaaaactactcgaaatgtaatcgaattgtgcagtgtcattgatcaattcattgttgcttgtgctataatcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039226 |
gcagccattgttttcggttaaacacgattcaaaactactcgaaatgtaatcgaattgtgcagtgtcattgatcaattcattgttgcttgtgctataatcc |
4039127 |
T |
|
| Q |
319 |
tcatggtcattaaggaaatcagtgaactgatcaattgagaaatcttttgataattctccatatgcatccacttgttgttgcatctcctgacgatcctgat |
418 |
Q |
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||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4039126 |
tcatgatcattgaggaaatcagtgaattgatcaattgagaaatcttttgatacttctccatatgcatccacttgttgttgcatctcctgacgatcgtgat |
4039027 |
T |
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| Q |
419 |
cattggctcgttgttgctcccta |
441 |
Q |
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| T |
4039026 |
cattggctcgttgttgctcccta |
4039004 |
T |
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