View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18304_low_9 (Length: 447)
Name: NF18304_low_9
Description: NF18304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18304_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 4877533 - 4877702
Alignment:
| Q |
124 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
223 |
Q |
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| T |
4877533 |
aaagttggcttgtttggtgaagcatcgaagttaccaaaagacagcggtggctctcataccataacttgctgagcaactttgcacgctctctccataagct |
4877632 |
T |
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| Q |
224 |
atggaaataaggatcggaacttgtttgttcgcgga-ttgattgctagaggtctattagattacatgcttt |
292 |
Q |
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| T |
4877633 |
atggaaataaggatcggaacttgtttgttcgcggatttgattgctagaggtctattagattacatgcttt |
4877702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 329 - 437
Target Start/End: Original strand, 4877690 - 4877798
Alignment:
| Q |
329 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt |
428 |
Q |
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| T |
4877690 |
gattacatgctttctagtttgttaaataaggcaaatatgtccttcaaattaacagatacctatgtttcttcttttatgctttttgattaagcttttgatt |
4877789 |
T |
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| Q |
429 |
atgcctatg |
437 |
Q |
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| T |
4877790 |
atgcctatg |
4877798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 4872847 - 4872958
Alignment:
| Q |
19 |
tatacaaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctacttaacaaactttccattggacaaccctattacatttactcttgaac |
118 |
Q |
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| T |
4872847 |
tatacaaaggtcaaagagttagtaagattgcaaaaatcatggaaactttgctatttaacaaactttccattggacaaccatattacatttactcttgaac |
4872946 |
T |
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| Q |
119 |
tatttaaagttg |
130 |
Q |
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| T |
4872947 |
tatttaaagttg |
4872958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 670484 - 670434
Alignment:
| Q |
266 |
ctagaggtctattagattacatgctttttggtttgctaattaaagaactat |
316 |
Q |
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| T |
670484 |
ctagaggtctattagattacatgctttccagttttctaattaaagaactat |
670434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 436
Target Start/End: Complemental strand, 2288395 - 2288345
Alignment:
| Q |
384 |
atacctatgtttcttcttttatgctttttgattaagcttttgattatgcctat |
436 |
Q |
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| T |
2288395 |
atacctatgtttcttgatttatgctttttgattaagc--ttgattatgcctat |
2288345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 28326870 - 28326916
Alignment:
| Q |
277 |
ttagattacatgctttttg-gtttgctaattaaagaactatgctttt |
322 |
Q |
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| T |
28326870 |
ttagattacatgcttttttagtttgctaattaaaggactatgctttt |
28326916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 47569542 - 47569592
Alignment:
| Q |
116 |
aactatttaaagttggcttgtttggtgaagcatcgaagttaccaaaagaca |
166 |
Q |
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| T |
47569542 |
aactatttaaagtgggcttgtttggtgaagcattgacgttatccaaagaca |
47569592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 47923090 - 47923009
Alignment:
| Q |
244 |
ttgtttgttcgcggattgattgctagaggtctatta---gattacatgctttttggtttgctaattaaagaactatgctttt |
322 |
Q |
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| T |
47923090 |
ttgttcgttcgtgggttgattgctagaggtctattatcagattatatgcttattggtttgctaatcaaagaactatgatttt |
47923009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 9066862 - 9066898
Alignment:
| Q |
286 |
atgctttttggtttgctaattaaagaactatgctttt |
322 |
Q |
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| T |
9066862 |
atgctttttggtttgctaattgaaggactatgctttt |
9066898 |
T |
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