View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_high_10 (Length: 410)
Name: NF18305_high_10
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 105 - 392
Target Start/End: Complemental strand, 43383608 - 43383321
Alignment:
| Q |
105 |
caagtgcctgatgggatccaaatactttgttacaacatgaacacacaaactgatcattctcatcgaccatcaccgttgttgttgattttgct---gcttt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
43383608 |
caagtgcctgatgggatccaaatactttgttacaacacgaacacacaaactgatcatcctcatcgacca---ccgttgttgttgcttttgcttttgcttt |
43383512 |
T |
|
| Q |
202 |
cttgttctttggatttgaattagcaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggagga |
301 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43383511 |
cttgttctttggatttgaattagaaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggtgga |
43383412 |
T |
|
| Q |
302 |
gggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43383411 |
gggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgc |
43383321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 105 - 392
Target Start/End: Complemental strand, 25870338 - 25870042
Alignment:
| Q |
105 |
caagtgcctgatgggatccaaatactttgttacaacatgaacacacaaactgatcattctcatcgaccatcaccgttgttgttgattt--------tgct |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||| |||||||||||||| ||| || | |
|
|
| T |
25870338 |
caagtgcctgatgggatccaaatactttgttgcaacacgaacacacaaactgatc---ctcatcatccaccaccgttgttgttgttttcttgttcttgtt |
25870242 |
T |
|
| Q |
197 |
gct-ttcttgttctttggatttgaattagcaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaa---caagttgttgtcttctgaaa |
292 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
25870241 |
cttgttcttgttctttggatttgaattagcaagtaaaagcaaagaagcagcaccttcctgttcttctggagtcacaagttgttgttgttgtcttctgaaa |
25870142 |
T |
|
| Q |
293 |
ttaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25870141 |
ttaggaggagggttaatgcctctccattgacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgc |
25870042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 43383695 - 43383810
Alignment:
| Q |
1 |
ggaaggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaac------gtggaaggggaagcggttaataataatgagatgataaactgca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43383695 |
ggaaggacgttcatgacgcctcacgatgacacaatgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgca |
43383794 |
T |
|
| Q |
95 |
tcatcggacacaagtg |
110 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43383795 |
tcatcggacacaagtg |
43383810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University