View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_high_14 (Length: 369)
Name: NF18305_high_14
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 4195899 - 4195564
Alignment:
| Q |
16 |
cagaaagattattcttgtgaagatcaagaatcccaagctgatgaagattcacaatactctcgggcaatgaagaattgaaccggttattaccacccgaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4195899 |
cagaaagattattcttgtgaagatcaagaatcccaagctgatgaagattcacaatactctcgggcaatgaagaattaaaccggttattaccacccgaaaa |
4195800 |
T |
|
| Q |
116 |
ttcctgaagattttccaacaatccaatctcttcaggaatcacaccagagaaattattattcgtcaaagtcaactgagacaaattcccagctccaccaata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195799 |
ttcctgaagattttccaacaatccaatctcttcaggaatcacaccagagaaattattattcgtcaaagtcaactgagacaaattcccagctccaccaata |
4195700 |
T |
|
| Q |
216 |
gtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaacttcacctgacaacttat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4195699 |
gtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaacttcacctgacaacttat |
4195600 |
T |
|
| Q |
316 |
taaaacctaacctaacgcgcgtcaatgtccgacact |
351 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4195599 |
taaaacccaacctaacgcgcgtcaatgtccgacact |
4195564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 34923689 - 34923831
Alignment:
| Q |
198 |
ttcccagctccaccaatagtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatgcggcagaccccaaaaacccgccggaa |
297 |
Q |
| |
|
||||| |||||| |||||||||| ||| ||||| |||||| |||||| | |||||||||||||||| ||||| || |||||||| | ||||||||||| |
|
|
| T |
34923689 |
ttccctgctccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgaggaagaccccagatacccgccggaa |
34923788 |
T |
|
| Q |
298 |
cttcacctgacaacttattaaaacctaacctaacgcgcgtcaa |
340 |
Q |
| |
|
| ||||| || ||| ||||||||| || || || |||||||| |
|
|
| T |
34923789 |
cctcaccggaaaaccgattaaaacccaatctcacacgcgtcaa |
34923831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University