View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_high_21 (Length: 282)
Name: NF18305_high_21
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 41486300 - 41486044
Alignment:
| Q |
1 |
gaaaacagaagacgtcagctgaatgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcgg |
100 |
Q |
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| T |
41486300 |
gaaaacagaagacgccagctgaatgatggaatcttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcgg |
41486201 |
T |
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| Q |
101 |
tgaagttggaaagaaaagggttcatgaagataacattgtgtgtttacagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaata |
200 |
Q |
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| T |
41486200 |
tgaagttggaaagaaaagggttcatgaagataacattgtgtgtttaccgatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaata |
41486101 |
T |
|
| Q |
201 |
a-atctcaggttcttctatattttttgtattactctcagaactcctcatgctctcgt |
256 |
Q |
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| T |
41486100 |
atatctcaggttcttctatattttttgtattactctcagaactcctcatgctctcgt |
41486044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 41483171 - 41482922
Alignment:
| Q |
23 |
atgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggtt |
122 |
Q |
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| T |
41483171 |
atgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggtt |
41483072 |
T |
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| Q |
123 |
catgaagataacattgtgtgtttacagatgttagcttgtttagagtgccga-------caatgacaacaaagtatgattctaataa-atctcaggttctt |
214 |
Q |
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| T |
41483071 |
catatagataacattgtgtgtttaccgatgttggcttgtttagagtgctgacaatgaccaatgacaacaaagtatgattctaacaacacctcaagttctt |
41482972 |
T |
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| Q |
215 |
ctatattttttgtattactctcagaactcctcatgctctcgtgttgattc |
264 |
Q |
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| T |
41482971 |
ctatattttctgttttactttcagatctcctcatgatctcgtgttgattc |
41482922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 50 - 258
Target Start/End: Original strand, 45384644 - 45384856
Alignment:
| Q |
50 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcat-gaagataacatt--gtgtgttta |
146 |
Q |
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| T |
45384644 |
tattcttttaactgaaacaagaaaatggaaacggtgatagataaactgcggtgaagttggaaagaaaagggttaatataagataacagtgcgggtgttta |
45384743 |
T |
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| Q |
147 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcct |
245 |
Q |
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| T |
45384744 |
ccgatgtcaacttgtttagagtgctgtcaatgacaacaaagtatgcttctaacaacatctcaagttcttctatattttcattattactttcagaactcct |
45384843 |
T |
|
| Q |
246 |
catgctctcgtgt |
258 |
Q |
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| T |
45384844 |
catgctctcgtgt |
45384856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 5671481 - 5671686
Alignment:
| Q |
50 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataacattgtgtgt---tta |
146 |
Q |
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| T |
5671481 |
tattcttttaactgaaacatgaaaggaaaaacgatgatagataaactgcggtgaagttggaaagaaaagtgttaatgtagataggaatgtgtgtgtgtta |
5671580 |
T |
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| Q |
147 |
cagatgttagcttgtttagagtgccgacaatgacaacaaagtatgattctaataa-atctcaggttcttctatattttttgtattactctcagaactcct |
245 |
Q |
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| T |
5671581 |
ctgatgccagcttggttaaaatgatgttaatgacaacaaagtatg-ctctaacaacatctcaagttcttatatatgttctatattactttcagaactcat |
5671679 |
T |
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| Q |
246 |
catgctc |
252 |
Q |
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| T |
5671680 |
catgctc |
5671686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 5680978 - 5681045
Alignment:
| Q |
50 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaa |
117 |
Q |
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| T |
5680978 |
tattcttttaactgaaacaagaaaggaaaaacgataatagataaactgcggtgaagttggaaagaaaa |
5681045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 5685591 - 5685643
Alignment:
| Q |
83 |
gtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataaca |
135 |
Q |
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| T |
5685591 |
gtgatagataaactgcggtgaatttggaaagaaaagggttaatgtagataaca |
5685643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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