View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_high_23 (Length: 258)
Name: NF18305_high_23
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 20170789 - 20171014
Alignment:
| Q |
12 |
acagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170789 |
acagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
20170888 |
T |
|
| Q |
112 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20170889 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
20170988 |
T |
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| Q |
212 |
agagaaacccatcttggagaaacaga |
237 |
Q |
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|||||||||||||||||||||||||| |
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| T |
20170989 |
agagaaacccatcttggagaaacaga |
20171014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 44392499 - 44392724
Alignment:
| Q |
12 |
acagatcatcattcatgtcaagagacatcacattgtgctnnnnnnnnggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392499 |
acagatcatcattcatgtcaagagacatcacattgtgctaaaaaaaaggtgtgaaaattgaaatgacagttaaattgtaacaaattagtttttgtttgtt |
44392598 |
T |
|
| Q |
112 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392599 |
tgttaaaacatcatataatatgcgaccaagtgagtatgtatgagatatatgtatatgagaccgaggagtaattaaaagtgacagcaactgagagacaagg |
44392698 |
T |
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| Q |
212 |
agagaaacccatcttggagaaacaga |
237 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44392699 |
agagaaacccatcttggagaaacaga |
44392724 |
T |
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