View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_high_25 (Length: 251)
Name: NF18305_high_25
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 39196052 - 39195828
Alignment:
| Q |
18 |
ttcattaatgtcatctaacaactcactaagccctaagatgtcgtcacataattcatacgttgtttctttctcatcatgtgttgtttttacctccacgtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39196052 |
ttcattaatgtcatctaacaactcactaagccctaagatgtcgtcacataattcatacgttgtttctttctcatcatgtgttgtttttacctccacgtca |
39195953 |
T |
|
| Q |
118 |
tcgattattttctctgtaacttcacaatctagtgaaggagtacgtggaatttgaacttctggttcaatataattttctttagtattaataatggtttgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39195952 |
tcgattattttctctgtaacttcacaatctagtgaaggagtacgtggaatttgaacttctggttcaatataattttctttagtattaataatggtttgtt |
39195853 |
T |
|
| Q |
218 |
ttttgtagcttttgttcttcttcat |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39195852 |
ttttgtagcttttgttcttcttcat |
39195828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University