View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_high_27 (Length: 241)
Name: NF18305_high_27
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 18814317 - 18814160
Alignment:
| Q |
16 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtatttgatgcaaagttaagacgcagct |
115 |
Q |
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| T |
18814317 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatgaagtctaaccaaaaagcaagattgagtatttgatgcaaagttaagacgcagct |
18814218 |
T |
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| Q |
116 |
tcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
173 |
Q |
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| T |
18814217 |
tcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
18814160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 18813624 - 18813782
Alignment:
| Q |
16 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatgaa-gtctaaccaaaaagcaagattgagtatttgatgcaaagttaagacgcagc |
114 |
Q |
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| T |
18813624 |
caaattacttgtggttgcaaattacttatttcccaaccatgcccatgaaagtctaaccaaaaagtaagattgagtttttgatgcaaacttaagacgcaaa |
18813723 |
T |
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| Q |
115 |
ttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
173 |
Q |
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| T |
18813724 |
ttcgacgaaacatgtgatttaacgtcaaaatgccaccttaaatgcatgcaaaacctttg |
18813782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 18814136 - 18814098
Alignment:
| Q |
196 |
ccaaatcattggtattattacttagttctccttcatttc |
234 |
Q |
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| T |
18814136 |
ccaaatcattggtattattacttagttctccttcttttc |
18814098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 18791690 - 18791738
Alignment:
| Q |
16 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatgaa |
64 |
Q |
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| T |
18791690 |
caaattacctgtggttgcaactcactcaattccctaccatacccatgaa |
18791738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 11327947 - 11328105
Alignment:
| Q |
16 |
caaattacttgtggttgcaagttactcaattcccaaccatgcccatgaag-tctaaccaaaa-agcaagattgagtatttgatgcaaagttaagacgcag |
113 |
Q |
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||||||||||||||||| | | ||| |||||| ||||||||||||| ||||| |||| || |||| || ||||||||||||||||||||| ||| |
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| T |
11327947 |
caaattacttgtggttgtatgaaacttcattccctgccatgcccatgaaaatctaagaaaaacagtaagagtgggtatttgatgcaaagttaagatgcaa |
11328046 |
T |
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| Q |
114 |
cttcattgaaacgtgtgatttaatgccaaattgccatctcaaaagcatgcaagacctttg |
173 |
Q |
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|||| ||||||| |||| ||||| |||| ||||| |||||| |||||||| ||||||| |
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| T |
11328047 |
cttcgttgaaacatgtg-tttaacatcaaaatgccacctcaaatgcatgcaaaacctttg |
11328105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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