View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_low_1 (Length: 709)
Name: NF18305_low_1
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 159 - 701
Target Start/End: Original strand, 33550454 - 33550996
Alignment:
| Q |
159 |
aaattgggggaatttgaaggtacaattcttataaatacattgagtttaattttgatatattgtctgtcagtgtaaaactttttacggtcaaataatcaca |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550454 |
aaattgggggaatttgaaggtacaattcttctaaatacattgagtttaattttgatatattgtctgtcagtgtaaaactttttacggtcaaataatcaca |
33550553 |
T |
|
| Q |
259 |
attaattgtatatgtggcttttaaaatagttttaattaagccatcannnnnnnaagtgaagttggtattatgaacaagaagggaaacccaaaattttaat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
33550554 |
attaattgtatatgtggcttttaaaatagttttaattaagccatcatttttttaagttaagttggtattatgaacaaggacggaaacccaaaattttaat |
33550653 |
T |
|
| Q |
359 |
gaataannnnnnnattttgcaaaacttaatatggcatggatgattagagaactgattttgtggcatgtcctaccacttcatgtcgaaggtctagcgtccg |
458 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550654 |
gaataatttttatattttgcaaaacttaatatggcatggatgattagagaactgattttgtggcatgtcctaccacttcatgtcgaaggtctagcgtccg |
33550753 |
T |
|
| Q |
459 |
gtgtccgacacatgtgattacatagaattacttccannnnnnncaaattttgacctgtatctacatgtcaatgtttgtgtcagtgcttcatagaaagcat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33550754 |
gtgtccgacacatgtgattacatagaattacttccattttttttaaatttttacctgtatcgacgtgtcaatgtctgtgtcagtgcttcatagaaagcat |
33550853 |
T |
|
| Q |
559 |
gcatatgtggtaataaatcccatcacttataagcaagattttcattcctaaagtatgaatttgatctggttccaggacacaggttacctcacagaatgca |
658 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550854 |
gcataagtggtaataaatcccatcacttataagcaagattttcatgcctaaagtatgaatttgatctggttccaggacacaggttacctcacagaatgca |
33550953 |
T |
|
| Q |
659 |
gtgcaactaggaaaaaacaaacccctatgaatattcttcgaca |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
33550954 |
gtgcaactaggaaaaaacaaacccctatgaataatgttcgaca |
33550996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 33550299 - 33550416
Alignment:
| Q |
4 |
cagctttcctgataaggaaacagtgaaggatgattgttcagatagcgttgagatttcagatcaaacaaagctggtataatatatcattcctctatttcat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550299 |
cagctttcctgataaggaaacagtgaaggaggattgttcagatagcgttgagatttcagatcaaacaaagctggtataatatatcattcctctatttcat |
33550398 |
T |
|
| Q |
104 |
ctaaaagttgtcataacc |
121 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
33550399 |
ccaaaagttgtcataacc |
33550416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 36145382 - 36145422
Alignment:
| Q |
257 |
caattaattgtatatgtggcttttaaaatagttttaattaa |
297 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
36145382 |
caattaattatatatgtgacttttaagatagttttaattaa |
36145422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University