View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_13 (Length: 373)
Name: NF18305_low_13
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 54791105 - 54791477
Alignment:
| Q |
1 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791105 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaa |
54791204 |
T |
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| Q |
101 |
gctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggc |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54791205 |
gctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgattctggatactggc |
54791304 |
T |
|
| Q |
201 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54791305 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaatggttt |
54791404 |
T |
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| Q |
301 |
catgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggac |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791405 |
catgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggac |
54791477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 54778040 - 54777669
Alignment:
| Q |
1 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54778040 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaa |
54777941 |
T |
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| Q |
101 |
gctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
54777940 |
gctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaaccttaacgattctggatactggc |
54777842 |
T |
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| Q |
201 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggttt |
300 |
Q |
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| T |
54777841 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaatggttt |
54777742 |
T |
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| Q |
301 |
catgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggac |
373 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
54777741 |
caagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggac |
54777669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 52283763 - 52284135
Alignment:
| Q |
1 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
52283763 |
aaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaatacctcccccgcctttgaccgaa |
52283862 |
T |
|
| Q |
101 |
gctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggc |
200 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | || ||| |||||||||||| |
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| T |
52283863 |
gctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaactgaatgattctggatactggc |
52283962 |
T |
|
| Q |
201 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52283963 |
taaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagacttcaacaatgactggaatggttt |
52284062 |
T |
|
| Q |
301 |
catgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggac |
373 |
Q |
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| T |
52284063 |
catgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggac |
52284135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 799049 - 799398
Alignment:
| Q |
11 |
caaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacctcccccggctttggccgaagctgtcaacc |
110 |
Q |
| |
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||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||||| |||||||||| | | |||||| || |
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| T |
799049 |
caaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacctcgcccggctttgactgtagctgttgtcc |
799148 |
T |
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| Q |
111 |
aacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaactttaacgatgctggatactggctaaaggaatt |
210 |
Q |
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|||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | | ||| ||||||||| || ||||||||| |
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| T |
799149 |
aacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatcacatgattctggatacttgcaaaaggaatt |
799242 |
T |
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| Q |
211 |
tgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttcaacaatgactggaatggtttcatgaatgca |
310 |
Q |
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||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||| |
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| T |
799243 |
tgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttcaacaatgactggaatgggtttatgaatgca |
799342 |
T |
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| Q |
311 |
agtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattc |
366 |
Q |
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||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| |
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| T |
799343 |
agtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattc |
799398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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