View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_15 (Length: 317)
Name: NF18305_low_15
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 15531114 - 15530826
Alignment:
| Q |
18 |
tttttattatatacaattaattcagtatgtactcataagttatacaagcaagatagatggtagaactcaattgttatatttatcatacgcaacaagctgg |
117 |
Q |
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| T |
15531114 |
tttttattatatacaactaattcagtatgtactcataagttatacaagcaagatagatggtagaactcagttgttatatttatcatacgcaacaagctgg |
15531015 |
T |
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| Q |
118 |
attcaattatcctcagaannnnnnnnggtatttggtgatagggttagaagatatcaatttacaatttacaagttggattcaattatcaattggagtgatt |
217 |
Q |
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| T |
15531014 |
attcaattaacctcagaattttttttggtatttggtgatagggttagaagatatcaatttacaatttacaagttggattcaattatcaattggagtgatt |
15530915 |
T |
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| Q |
218 |
atactttgctgatgtgttagaagatatcaatttacaccgaaagaaaaaactacttaaaaataccacttttatgtgtttcatctacttcat |
307 |
Q |
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| T |
15530914 |
atactttgctgatgtgttagaagatatcaatttaca-tgaaagaaaaaactacttaaaaataccacttttatgtgtttcatctgcttcat |
15530826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 17917992 - 17917947
Alignment:
| Q |
237 |
gaagatatcaatttacaccgaaagaaaaaactacttaaaaataccac |
283 |
Q |
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| T |
17917992 |
gaagatatcaatttacaacaaaa-aaaaaactacttaaaaataccac |
17917947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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