View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_16 (Length: 314)
Name: NF18305_low_16
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 4329585 - 4329292
Alignment:
| Q |
19 |
actattcctcctcaaattgcgaagctatccgcgcttcggtttttgaacttgtctcaaaacagtctttatggagagataccaaatgacatggggaaaatga |
118 |
Q |
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| T |
4329585 |
actattcctcctcaaattgcgaagctatccgcgcttcggtttttgaacttgtctcaaaacagtctttatggagagataccaaatgacatggggaaaatga |
4329486 |
T |
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| Q |
119 |
aattgttagaatcacttgatctttcattgaacaaaatttcaggtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329485 |
aattgttagaatcacttgatctttcattgaacaaaatttcaggtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaa |
4329386 |
T |
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| Q |
219 |
caacaacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttaactatgcaggtaatcctcagctctgtgctcctcct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
4329385 |
caacaacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttaactatgcaggtaatcctcagctttgtggtcctcct |
4329292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 4498326 - 4498617
Alignment:
| Q |
19 |
actattcctcctcaaattgcgaagctatccgcgcttcggtttttgaacttgtctcaaaacagtctttatggagagataccaaatgacatggggaaaatga |
118 |
Q |
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|||||||| ||||||||| |||||||||| || |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
4498326 |
actattccacctcaaatttcgaagctatctgcacttcggtttttgaacttgtctcgaaaccgtctttatggaga--taccaaatgacatggggaaaatga |
4498423 |
T |
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| Q |
119 |
aattgttagaatcacttgatctttcattgaacaaaatttcaggtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaa |
218 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4498424 |
aattgttagaatcaattgatctttcattgaacaaaatttcatgtcaaatacctcaaagtatgtctgatttgtcatttttaagtttcctgaatctatcaaa |
4498523 |
T |
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| Q |
219 |
caacaacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttaactatgcaggtaatcctcagctctgtgctcctcct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| |
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| T |
4498524 |
caacaacttatcaggaagaattccaactagcactcaacttcagagctttgaagcacttagctatgcatgtaatccttagctatgtgctcctcct |
4498617 |
T |
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