View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_low_18 (Length: 302)
Name: NF18305_low_18
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_18 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 24245887 - 24245586
Alignment:
| Q |
1 |
gcatcggtagagtagtacttaaggataaaacagagaatattagagtacataaaagatcaacgataaaccattctggtttagcccatattactcctccagc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245887 |
gcattggtagagtagtacttaaggataaaacagagaatattagagtacataaaagatcaacgataaaccattctggtttagcccatattactcctccagc |
24245788 |
T |
|
| Q |
101 |
aatcatcactccaaaagattgaatcatatcagtcatcacatgcaaataagccccttggatatttatattcaaaacattagtattcttcttaccatttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245787 |
aatcatcactccaaaagattgaatcatatcagtcatcacatgcaaataagccccttggatatttatattcaaaacattagtattcttcttaccatttgaa |
24245688 |
T |
|
| Q |
201 |
agcatggtaaggttctcctcatcagttattttaggtagttcctccatcccatgatcatgatccgagtctccatggcattgatgatgactctgatcatgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245687 |
agcatggtaaggttctcctcatcagttattttaggtagttcctccatcccatgatcatgatccgagtctccatggcattgatgatgactctgatcatgac |
24245588 |
T |
|
| Q |
301 |
ca |
302 |
Q |
| |
|
|| |
|
|
| T |
24245587 |
ca |
24245586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University