View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18305_low_19 (Length: 296)

Name: NF18305_low_19
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18305_low_19
NF18305_low_19
[»] chr8 (1 HSPs)
chr8 (16-296)||(36168240-36168515)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 36168515 - 36168240
Alignment:
Q  16 agtaccacagattatacataaacaattgctgataagctttcatttgatttgcaaaacaaatttaacatgtgatttgcaaagcaaatttagcataatttgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36168515 agtaccacagattatacataaacaattgctgataagctttcatttgatttgcaaaacaaatttaacatgtgatttgcaaagcaaatttagcataatttgg 36168416  T
Q  116 accatgtgatagtaatcattatagttattacatcgtgagattctacttgtctcctctacattatgctgcatgggcacttgcagtcaaatccaatccggtc 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||    
T  36168415 accatgtgatagtaatcattatagttattacatcgtcagattctacttgtctcctctacattatgctgcatgggcacttgcagtcaa-----atccggtc 36168321  T
Q  216 caataaatatgaagttcaaaatgtcaacaaggacacaaggaagccttcatttctaagcaaggtatacaaagtaacctaccc 296  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36168320 caataaatatgaagttcaaaatgtcaagaaggacacaaggaagccttcatttctaagcaaggtatacaaagtaacctaccc 36168240  T

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