View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_20 (Length: 295)
Name: NF18305_low_20
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 30801393 - 30801120
Alignment:
| Q |
14 |
gcatgtactttacctaattatccccnnnnnnnttgaataatatttttattttagctattttataactcatttcacactataactgtatatattagatatc |
113 |
Q |
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| T |
30801393 |
gcatgtactttacctaattatccccaaaaaaattgaataatatttt-attttagctattttataactcatttcacactataactgtatatattagatatc |
30801295 |
T |
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| Q |
114 |
catatatacatgaaacattagattggatgcctgtacattgtgaactgaacaatgacataaattttcctcattataccctacaaaataaaaaattaaattg |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30801294 |
catatatacgtgaaacattagattggatgcctgtacattgtgaactgaacaatgacataagttttcctcattataccctacaaaataaaaaattaaattg |
30801195 |
T |
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| Q |
214 |
atctcgttttctatttgagagattcaatatggatgcctgcttcttatgaataagagactacattgggttcatatc |
288 |
Q |
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|| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30801194 |
atgtcgttttctatttgagagattcaatattgatgcctgcatcttatgaataagagactacattgggttcatatc |
30801120 |
T |
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