View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_low_22 (Length: 271)
Name: NF18305_low_22
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 48474662 - 48474915
Alignment:
| Q |
13 |
tcaatttgttcctgtttgggagcatcagaagcatctccataagagttttgaggagtttccacttcaatgaatcgatcaagatcttatcaaattgacattc |
112 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48474662 |
tcaatttgttcctgtttgggagcatcaaaagcatctccgtaagagttttgaggagtttccacttcaatgaatcgatcaagatcttatcaaattgacattc |
48474761 |
T |
|
| Q |
113 |
aatgagaggaatgtttagaggctcattttgattatcaatcatctcttcaagttgattttcaacttgatcaacaatctctgttagcctctcctccttatat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48474762 |
aatgagaggaatgtttagaggctcattttgattttcaatcatctcttcaagttgattttcaacttgatcaacaatctctgttagcctctgctccttatat |
48474861 |
T |
|
| Q |
213 |
gagtgggaggcgcgaactttcctgtgctggttctggtagggttgttggtggtgg |
266 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
48474862 |
gagtgggaggcgcaaactttcctgtgttggttctggtagggttgttgggggtgg |
48474915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 16520123 - 16520073
Alignment:
| Q |
204 |
tccttatatgagtgggaggcgcgaactttcctgtgctggttctggtagggt |
254 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||||||| |||||||| |
|
|
| T |
16520123 |
tccttatacgagtgggaggcgcaacctatcctgtgctggttccggtagggt |
16520073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University