View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_24 (Length: 255)
Name: NF18305_low_24
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 36670768 - 36670984
Alignment:
| Q |
17 |
agcataggtagcaactgtattgtcccaagtaatgtttgcaacgccaacttgtgcacgagctgtgttgtgggcatcgacaaaatcttgaggtaagttttgt |
116 |
Q |
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| T |
36670768 |
agcataggtagcaactgtgttgtcccaagtaatgtttgcaacgccaacttgtgcacgagctgtgttgtgggcatcgacaaaatcttgaggtaagttttgt |
36670867 |
T |
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| Q |
117 |
gcattggagaatgaaaaccaaagggataaaatggtcaagaagaggctaaaaagtgaaaatgtgttgttgaaactcattgttatgttctgtatgtatctta |
216 |
Q |
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| T |
36670868 |
gcattggagaatgaaaaccaaagggataaaatggtcaagaagaggctaaaaagtgaaaatgtgttgttgaaactcattgttatgttctgtatgtatctta |
36670967 |
T |
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| Q |
217 |
gatgagagttgagaagt |
233 |
Q |
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| T |
36670968 |
gatgagagttgagaagt |
36670984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 1772361 - 1772254
Alignment:
| Q |
117 |
gcattggagaatgaaaaccaaagggataaaatggtcaagaagaggctaaaaagtgaaaatgtgttgttgaaactcattgttatgttctgtatgtatctta |
216 |
Q |
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| T |
1772361 |
gcattggagaatgaaaaccacaaggatcaaatggtc---aagaggctaaaaagataaaacgaattatagaaactcatggttatgt----tatgtttctta |
1772269 |
T |
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| Q |
217 |
gatgagagttgagaa |
231 |
Q |
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| T |
1772268 |
gatgagagttgagaa |
1772254 |
T |
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