View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_low_28 (Length: 225)
Name: NF18305_low_28
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 25953703 - 25953509
Alignment:
| Q |
16 |
cagagacaatagccaagaaacaagacaaagtcactagttagataacatgactgaagcattaaagaggaccgatccaccagagatgaaaatcgaaaaca-- |
113 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25953703 |
cagaaacaatagccaagaaacaaaacaaagtcactagttaggtaacatgactgaagcattaaagaggaccgatccaccagagatgaaaataaaaaacatt |
25953604 |
T |
|
| Q |
114 |
-----tannnnnnnnnagttttcaaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttttaaact |
203 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25953603 |
ttttttttttttttttagctttcaaacacaagatagtcaaatcaaatatagagaaggtcagcattttctagactctcctcctaagcttttaaact |
25953509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 18642405 - 18642471
Alignment:
| Q |
131 |
caaacacaagatagtcaaatcaaatatagagaaggtcggcattttctagactctcctcctaagcttt |
197 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| |||||||||||||| |||||||| |||| |
|
|
| T |
18642405 |
caaacacaagatagccaaatcaatggaagagaagatcgacattttctagactcacctcctaaacttt |
18642471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University