View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_30 (Length: 206)
Name: NF18305_low_30
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_30 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 43383963 - 43384137
Alignment:
| Q |
36 |
ataatcattcttcttctcccctcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttag |
135 |
Q |
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| T |
43383963 |
ataatcattcttcttctcccctcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttaa |
43384062 |
T |
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| Q |
136 |
ttaagttattaggtcatc----atcaccgttgctcatgtatgtttcattttatttgcatcctaattctaattacc |
206 |
Q |
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| T |
43384063 |
ttaagttattaggtcatcatcgatcaccgttgctcatgtttgtttcattttatttgcaccctaattctaattacc |
43384137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25870636 - 25870684
Alignment:
| Q |
39 |
atcattcttcttctcccctcactcttgatttgaggttgggactttaatt |
87 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
25870636 |
atcattcttcttctcccctcactcttcatttgaggttgtgactttaatt |
25870684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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