View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18305_low_4 (Length: 619)
Name: NF18305_low_4
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 54791466 - 54791924
Alignment:
| Q |
1 |
aattcaaaggacatgcatgccagttcagacatttatggaggggtagcacgtgaagatgattataattgtgtagggccaatcgtggagtaccttcgggaca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
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| T |
54791466 |
aattcaaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaaca |
54791565 |
T |
|
| Q |
101 |
aaggaaggctgagaacaatttcagatatggttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacactacaaatga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54791566 |
aaggaaggctgagaacagtttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatga |
54791665 |
T |
|
| Q |
201 |
aaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791666 |
aaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggt |
54791765 |
T |
|
| Q |
301 |
ttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
54791766 |
ttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtatttttttctattcttgtatgatcatt |
54791865 |
T |
|
| Q |
401 |
gaagcagaagagtagnnnnnnncttataggttttaatgctacaaaaatgtctgtctcac |
459 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
54791866 |
gaagcagaagagtagaaaaaaacttataggttttaatgctacaaaaatgtctgtctcac |
54791924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 52284124 - 52284538
Alignment:
| Q |
1 |
aattcaaaggacatgcatgccagttcagacatttatggaggggtagcacgtgaagatgattataattgtgtagggccaatcgtggagtaccttcgggaca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
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|
| T |
52284124 |
aattcaaaggacatgcaggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaaca |
52284223 |
T |
|
| Q |
101 |
aaggaaggctgagaacaatttcagatatggttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacactacaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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|
| T |
52284224 |
aaggaaggctgagaacaatttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggctaatgaaattgatattacaaatga |
52284323 |
T |
|
| Q |
201 |
aaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggt |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52284324 |
aaacctcaacaaaatgcaatataagtataacgagaagaccatgtctttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggt |
52284423 |
T |
|
| Q |
301 |
ttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcatt |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||| |
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|
| T |
52284424 |
ttgtataatttctgttagaatctgattttgtcttattgtatgtaaaggccgtgtgcttcaagtttggccatgtatgtttttatattcttgtacgttcatt |
52284523 |
T |
|
| Q |
401 |
gaagcagaagagtag |
415 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
52284524 |
gaagcagtagagtag |
52284538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 54777680 - 54777220
Alignment:
| Q |
1 |
aattcaaaggacatgcatgccagttcagacatttatggaggggtagcacgtgaagatgattataattgtgtagggccaatcgtggagtaccttcgggaca |
100 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||| |
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|
| T |
54777680 |
aattcaatggacatgctggccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaaca |
54777581 |
T |
|
| Q |
101 |
aaggaaggctgagaacaatttcagatatggttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacactacaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||| |
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|
| T |
54777580 |
aaggaaggctgagaacaatttcggatattgttcaagaagcatctgaaagagaaaatagcaaacgggaaaacctgaccaatgaaattgacattccaaatga |
54777481 |
T |
|
| Q |
201 |
aaacctcaacaaaatgcagtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggt |
300 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
54777480 |
aaacctcaacataattcggtataagtataatgagaagaccatgtccttaagtaggatgctggaggagaatgacaggcttcacaatgcttttgttgaaggt |
54777381 |
T |
|
| Q |
301 |
ttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
54777380 |
ttgtataatgtctgttagaatctgattttgccttattgtatgtaaaggctgtgtgcttcatgtttggccatgtatgtttttctattcttgtacgatcatt |
54777281 |
T |
|
| Q |
401 |
gaagcagaagagtagnnnnnnnctt--ataggttttaatgctacaaaaatgtctgtctcac |
459 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54777280 |
gaggcagaagagtagaaaaaaacttgcataggttttaatgctacaaaaatgtctgtctcac |
54777220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 799414 - 799734
Alignment:
| Q |
21 |
cagttcagacatttatggaggggtagcacgtgaagatgattataattgtgtagggccaatcgtggagtaccttcgggacaaaggaaggctgagaacaatt |
120 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||||||||||||||| |||| || | |||||||||||| |||||||||||||||| |||||| |
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|
| T |
799414 |
cagttcagagatttacggttgggttgcacgtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaaggctgaggacaatt |
799513 |
T |
|
| Q |
121 |
tcagatatggttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacactacaaatgaaaacctcaacaaaatgcagt |
220 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| | ||| |||||||| |||||||| ||||||| |
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|
| T |
799514 |
tcagatatagttcaagaagcatctcaaagcagaaatagcattgtggaaaacctggcaaatgagattgatattactaatgaaaatctcaacaagatgcagt |
799613 |
T |
|
| Q |
221 |
ataagtataatgagaagaccatgtccttaagtaggatgctggaggagaaagacaggcttcacaatgcttttgttgaaggtttgtataatgtctgttagaa |
320 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| || |
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|
| T |
799614 |
ataggtataatgagaagactatgtccttgagtaggatgctggaggagaaagacaaacttcacagtgcttttgttgaaggtttgtataatttctgttataa |
799713 |
T |
|
| Q |
321 |
tctgattttgccttattgtat |
341 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
799714 |
tctgattttgccttattgtat |
799734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 550 - 597
Target Start/End: Original strand, 54793463 - 54793510
Alignment:
| Q |
550 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccctca |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793463 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccctca |
54793510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 523
Target Start/End: Original strand, 54791949 - 54791988
Alignment:
| Q |
484 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791949 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
54791988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 550 - 594
Target Start/End: Original strand, 52286135 - 52286179
Alignment:
| Q |
550 |
gttgttctgctgtgaatatattgtggagactaaagttgttccccc |
594 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
52286135 |
gttgttctgctgtgagtatattgtggagactaatgttgttccccc |
52286179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 519
Target Start/End: Complemental strand, 54777195 - 54777160
Alignment:
| Q |
484 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
54777195 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
54777160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 596
Target Start/End: Original strand, 801324 - 801369
Alignment:
| Q |
551 |
ttgttctgctgtgaatatattgtggagactaaagttgttccccctc |
596 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
801324 |
ttgttctgctgtaaatatattgtggagactaaagttgatacccctc |
801369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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