View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_5 (Length: 587)
Name: NF18305_low_5
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 4077977 - 4078276
Alignment:
| Q |
16 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
115 |
Q |
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| T |
4077977 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
4078076 |
T |
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| Q |
116 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgcctt |
215 |
Q |
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| T |
4078077 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgcctt |
4078176 |
T |
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| Q |
216 |
gttcgactgcaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
315 |
Q |
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| T |
4078177 |
gttcgactccaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
4078276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 316 - 571
Target Start/End: Original strand, 4078375 - 4078630
Alignment:
| Q |
316 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
415 |
Q |
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| T |
4078375 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4078474 |
T |
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| Q |
416 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
515 |
Q |
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| T |
4078475 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4078574 |
T |
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| Q |
516 |
aaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgat |
571 |
Q |
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| T |
4078575 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatgtgat |
4078630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 316 - 571
Target Start/End: Original strand, 4101128 - 4101383
Alignment:
| Q |
316 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
415 |
Q |
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| T |
4101128 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4101227 |
T |
|
| Q |
416 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
515 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101228 |
tttgttaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaatctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4101327 |
T |
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| Q |
516 |
aaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgat |
571 |
Q |
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| T |
4101328 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatatgat |
4101383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 130 - 315
Target Start/End: Original strand, 4100846 - 4101031
Alignment:
| Q |
130 |
gttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgccttgttcgactgcaaaa |
229 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4100846 |
gttgacacgtagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgccttgttcaactgcaaaa |
4100945 |
T |
|
| Q |
230 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
315 |
Q |
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| T |
4100946 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcctaaactgagggaatgtgaaggatggtgtg |
4101031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 4502677 - 4502620
Alignment:
| Q |
233 |
tagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaa |
290 |
Q |
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| T |
4502677 |
tagggaggatatggactccgcatcagttgtacctaaagttcatggaattcctcccaaa |
4502620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 19568715 - 19568774
Alignment:
| Q |
240 |
gatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaa |
299 |
Q |
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|||||||||| || ||||| |||||||||||||| ||||||||||| |||| ||| |||| |
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| T |
19568715 |
gatatggactatgtatcatctgtatctcaagttcatggaattcctctcaaagtgaaggaa |
19568774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 19569000 - 19569053
Alignment:
| Q |
354 |
aaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaag |
407 |
Q |
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|||||| |||||| | |||||||||| ||||||||| ||||||||||| ||||| |
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| T |
19569000 |
aaattttctaggcgaggacctattcgactagcgaatttgctaatttttgaaaag |
19569053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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