View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_6 (Length: 575)
Name: NF18305_low_6
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Complemental strand, 37112386 - 37111832
Alignment:
| Q |
20 |
tagcaagagacatgtgcttaaacaataatagaactactcgtcttggattgcgacaatacaataaaagacaatccacctcttgtagaatagatacaattac |
119 |
Q |
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| T |
37112386 |
tagcaagagacatgtgcttaaacaataatagaactactcgtcttggattgcgacaatacaataaaagacaatccacctcttgtagaatagatacaattac |
37112287 |
T |
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| Q |
120 |
tcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgataattctttatattcttttg |
219 |
Q |
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| T |
37112286 |
tcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgataat-ctttatattcttttg |
37112188 |
T |
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| Q |
220 |
tgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaactaaaagagaacggtgag |
319 |
Q |
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| T |
37112187 |
tgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaactaaaaaagaagggtgag |
37112088 |
T |
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| Q |
320 |
attgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcttcttatacttcaggtgggtcatttgcttacttaagagt |
419 |
Q |
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| T |
37112087 |
attgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcctcttatacttcaggtgggtcatttgcttacttaagagt |
37111988 |
T |
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| Q |
420 |
agaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccgcagtagctcgatcatggacctcctatttt |
519 |
Q |
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| T |
37111987 |
agaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccgcggtagctcgatcatggacctcctatttt |
37111888 |
T |
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| Q |
520 |
gccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaa |
575 |
Q |
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| T |
37111887 |
gccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaa |
37111832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 390 - 575
Target Start/End: Complemental strand, 37120272 - 37120087
Alignment:
| Q |
390 |
ttcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgcc |
489 |
Q |
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| T |
37120272 |
ttcaggtgggtcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcg |
37120173 |
T |
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| Q |
490 |
gcagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaa |
575 |
Q |
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| T |
37120172 |
gcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaa |
37120087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 391 - 575
Target Start/End: Original strand, 37135982 - 37136166
Alignment:
| Q |
391 |
tcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccg |
490 |
Q |
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| T |
37135982 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
37136081 |
T |
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| Q |
491 |
cagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaa |
575 |
Q |
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| T |
37136082 |
ccgtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaa |
37136166 |
T |
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