View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18305_low_7 (Length: 485)

Name: NF18305_low_7
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18305_low_7
NF18305_low_7
[»] scaffold0049 (3 HSPs)
scaffold0049 (265-478)||(59362-59575)
scaffold0049 (81-218)||(59622-59759)
scaffold0049 (17-89)||(59780-59852)
[»] chr4 (23 HSPs)
chr4 (17-92)||(18830646-18830721)
chr4 (17-92)||(22017954-22018029)
chr4 (17-92)||(2063278-2063353)
chr4 (17-92)||(5448328-5448403)
chr4 (15-74)||(18836369-18836428)
chr4 (17-92)||(37694972-37695047)
chr4 (17-90)||(2232446-2232518)
chr4 (17-86)||(5324761-5324830)
chr4 (76-129)||(10757576-10757629)
chr4 (76-129)||(10970747-10970800)
chr4 (17-86)||(18500730-18500799)
chr4 (17-73)||(10380686-10380742)
chr4 (81-129)||(22017888-22017936)
chr4 (17-92)||(2634096-2634171)
chr4 (17-87)||(11821855-11821925)
chr4 (17-90)||(30470892-30470965)
chr4 (76-129)||(47463820-47463873)
chr4 (17-73)||(47144821-47144877)
chr4 (61-102)||(2634168-2634209)
chr4 (17-86)||(9826764-9826833)
chr4 (17-86)||(47943526-47943595)
chr4 (70-102)||(10757691-10757723)
chr4 (70-102)||(10970862-10970894)
[»] chr7 (19 HSPs)
chr7 (280-469)||(5853927-5854116)
chr7 (17-92)||(27508708-27508783)
chr7 (17-85)||(14197538-14197606)
chr7 (17-88)||(36150948-36151019)
chr7 (17-86)||(5080187-5080256)
chr7 (17-92)||(6441417-6441491)
chr7 (17-92)||(43257336-43257411)
chr7 (17-92)||(15000778-15000853)
chr7 (17-84)||(45012928-45012995)
chr7 (77-129)||(27508797-27508849)
chr7 (81-129)||(45012855-45012903)
chr7 (17-88)||(38761068-38761139)
chr7 (61-102)||(6441488-6441529)
chr7 (52-93)||(15272394-15272435)
chr7 (61-102)||(27508670-27508711)
chr7 (77-126)||(38761002-38761051)
chr7 (81-129)||(5080115-5080163)
chr7 (89-129)||(15000879-15000919)
chr7 (81-129)||(15272329-15272377)
[»] chr5 (13 HSPs)
chr5 (17-129)||(34419612-34419724)
chr5 (17-93)||(17497127-17497203)
chr5 (17-92)||(10760080-10760154)
chr5 (17-92)||(30852711-30852786)
chr5 (19-92)||(2555573-2555646)
chr5 (45-86)||(20429955-20429996)
chr5 (81-129)||(21211423-21211471)
chr5 (17-92)||(21211489-21211564)
chr5 (17-87)||(13753306-13753376)
chr5 (17-86)||(19491804-19491873)
chr5 (17-84)||(19564735-19564802)
chr5 (81-129)||(17497220-17497268)
chr5 (81-129)||(21943749-21943797)
[»] chr1 (6 HSPs)
chr1 (17-92)||(50335573-50335648)
chr1 (17-92)||(37608104-37608178)
chr1 (29-92)||(13735589-13735653)
chr1 (81-129)||(37608196-37608244)
chr1 (43-92)||(11633288-11633337)
chr1 (17-73)||(8097806-8097862)
[»] chr8 (15 HSPs)
chr8 (19-92)||(25149310-25149383)
chr8 (19-92)||(12106939-12107012)
chr8 (24-92)||(35202738-35202806)
chr8 (16-90)||(21185793-21185867)
chr8 (81-129)||(12106873-12106921)
chr8 (17-93)||(22326477-22326553)
chr8 (17-92)||(18324129-18324204)
chr8 (17-92)||(21124491-21124566)
chr8 (17-92)||(22469505-22469579)
chr8 (17-71)||(37543885-37543939)
chr8 (43-92)||(23976163-23976212)
chr8 (61-102)||(31253998-31254039)
chr8 (61-102)||(35202692-35202733)
chr8 (81-129)||(21185887-21185935)
chr8 (77-129)||(22469439-22469491)
[»] chr2 (7 HSPs)
chr2 (17-92)||(22092992-22093067)
chr2 (17-92)||(32092831-32092906)
chr2 (17-86)||(39598585-39598654)
chr2 (17-86)||(31820046-31820115)
chr2 (81-129)||(32092765-32092813)
chr2 (369-442)||(5066130-5066203)
chr2 (20-92)||(24006952-24007024)
[»] chr6 (13 HSPs)
chr6 (17-92)||(26705160-26705235)
chr6 (24-92)||(13536700-13536768)
chr6 (17-92)||(10672690-10672765)
chr6 (17-92)||(21222537-21222612)
chr6 (17-88)||(25089284-25089355)
chr6 (280-478)||(6211835-6212033)
chr6 (17-73)||(19295372-19295428)
chr6 (43-92)||(10587959-10588008)
chr6 (81-129)||(10587893-10587941)
chr6 (81-129)||(19295287-19295335)
chr6 (77-129)||(26705249-26705301)
chr6 (17-71)||(10862145-10862199)
chr6 (65-102)||(19295397-19295434)
[»] chr3 (20 HSPs)
chr3 (17-92)||(15031352-15031427)
chr3 (17-92)||(11989117-11989192)
chr3 (17-92)||(14434712-14434787)
chr3 (17-92)||(26498620-26498695)
chr3 (81-129)||(26498554-26498602)
chr3 (17-95)||(36383130-36383208)
chr3 (17-78)||(7300137-7300198)
chr3 (43-92)||(39541768-39541817)
chr3 (81-129)||(15031445-15031493)
chr3 (17-93)||(38498235-38498311)
chr3 (81-129)||(38498328-38498376)
chr3 (17-92)||(21514876-21514951)
chr3 (17-92)||(44967987-44968062)
chr3 (43-93)||(20759085-20759135)
chr3 (20-86)||(41984983-41985049)
chr3 (81-126)||(20759152-20759197)
chr3 (76-129)||(21514964-21515017)
chr3 (17-86)||(26920287-26920356)
chr3 (76-129)||(48755333-48755386)
chr3 (17-88)||(48755459-48755531)
[»] scaffold0039 (1 HSPs)
scaffold0039 (25-84)||(27569-27628)
[»] scaffold0003 (2 HSPs)
scaffold0003 (17-84)||(314210-314277)
scaffold0003 (65-102)||(314204-314241)
[»] scaffold0102 (2 HSPs)
scaffold0102 (45-90)||(24052-24097)
scaffold0102 (61-102)||(23986-24027)
[»] scaffold0018 (2 HSPs)
scaffold0018 (80-129)||(72135-72184)
scaffold0018 (17-92)||(72014-72089)
[»] scaffold1300 (1 HSPs)
scaffold1300 (17-92)||(1482-1557)
[»] scaffold0407 (2 HSPs)
scaffold0407 (17-88)||(911-982)
scaffold0407 (17-88)||(7375-7446)
[»] scaffold0026 (1 HSPs)
scaffold0026 (17-86)||(57581-57650)
[»] scaffold0011 (1 HSPs)
scaffold0011 (81-126)||(190187-190232)


Alignment Details
Target: scaffold0049 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 265 - 478
Target Start/End: Complemental strand, 59575 - 59362
Alignment:
Q  265 caattctgtttgaacttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaag 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  59575 caattctgtttgaacttacccaatcaagcatagctcctttctggttagcagctttcccaaattcaagagctctttgtccagaaatcaattcaagcagaag 59476  T
Q  365 aattccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcaca 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59475 aattccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcaca 59376  T
Q  465 tgtgagtctctgtg 478  Q
    ||||||||||||||    
T  59375 tgtgagtctctgtg 59362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 59759 - 59622
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtgcctattttagaacaagtggctcttttatgtactcagtacaacaagacaaat 180  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59759 cattcagggactaaagtgactacacctttcccattgagggactaaagtgcctattttagaacaagtggctcttttatgtactcagtacaacaagacaaat 59660  T
Q  181 gatttgaagtgttggtgagtgcatacttgtctattatt 218  Q
    |||||||||||||||||||||||||||||| |||||||    
T  59659 gatttgaagtgttggtgagtgcatacttgtatattatt 59622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 59852 - 59780
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcaggg 89  Q
    |||||||||||||||| || ||||| |||||| |||||||| |||||||||| |||||| |||||||||||||    
T  59852 atttagtccctgaatgcagactccgttagtcaatttagtccctgaaattgactaacagagtctacattcaggg 59780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 18830721 - 18830646
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18830721 atttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacagaatctacattcagggact 18830646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 22018029 - 22017954
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| |||||||||  ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22018029 atttagtctctgaatgtatactccgttaatcactttagtccttgaaattgaccaacagaatatacattcagggact 22017954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 2063278 - 2063353
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||| |||||||  |  | |||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  2063278 atttagtccctaaatgtagaatttgttagtcactttagtctttaaaattgaccaacagagtctacattcagggact 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 5448328 - 5448403
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||| ||| || |  ||||||||||||| | ||||||||||||||||| | ||||||||||||||    
T  5448328 atttagtccctgaatatagacttcattagtcactttagttcctgaaattgaccaacagagtttacattcagggact 5448403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 18836428 - 18836369
Alignment:
Q  15 tcatttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacag 74  Q
    ||||||||||||||||||||| ||||  ||||||||||||||| | ||||||||||||||    
T  18836428 tcatttagtccctgaatgtagactccattagtcactttagtccataaaattgaccaacag 18836369  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 37695047 - 37694972
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||| ||| |||   ||||||||||||||  | ||||||||||||| ||||||||||||||||||    
T  37695047 atttagtccctgaatatagactctattagtcactttagtcacttaaattgaccaacacaatctacattcagggact 37694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 2232518 - 2232446
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcaggga 90  Q
    ||||||||||||||||||| ||    || |||||||||||| |||||||||||||||||||||||||| |||||    
T  2232518 atttagtccctgaatgtagactttt-taatcactttagtccctgaaattgaccaacagaatctacattgaggga 2232446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 5324830 - 5324761
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||| ||||||||  ||| | | ||||||||||||| ||||||||||||||||| ||||||||||    
T  5324830 atttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacagagtctacattca 5324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 10757629 - 10757576
Alignment:
Q  76 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  10757629 atctacattcagggactaaagtgactactcatttctcattcagggactaaagtg 10757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 10970800 - 10970747
Alignment:
Q  76 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||||||||||||||| ||||||| | |||| ||||||||||||||||||    
T  10970800 atctacattcagggactaaagtgactactcatttctcattcagggactaaagtg 10970747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 18500730 - 18500799
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||||||||| ||| ||| | || |||||||||||  |||||||||||||||| |||||||||||    
T  18500730 atttagtccctgaatttagactctgttaatcactttagtctctgaaattgaccaacagtatctacattca 18500799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 10380742 - 10380686
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaaca 73  Q
    ||||||||||| ||||||| ||| | ||||||||||||||| |||||||||||||||    
T  10380742 atttagtccctaaatgtagactcagttagtcactttagtccctgaaattgaccaaca 10380686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 22017936 - 22017888
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  22017936 cattcagggactaaagtgactactcctttcccattcagggattaaagtg 22017888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 2634171 - 2634096
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||  | || |||||||||||  ||||||||||||| | | ||||||||||||||||    
T  2634171 atttagtccctgaatgtagactttgttaatcactttagtcgctgaaattgaccaataaagtctacattcagggact 2634096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 11821855 - 11821925
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcag 87  Q
    ||||||||  ||||||||| ||| | ||||||||||||||| ||||||||||||||| | |||| ||||||    
T  11821855 atttagtctatgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaagtctaaattcag 11821925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 30470965 - 30470892
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcaggga 90  Q
    ||||||||  ||||||||| ||| | ||||||||||||||| ||||||||||||||| |  ||||||| |||||    
T  30470965 atttagtcattgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaatgctacatttaggga 30470892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 47463873 - 47463820
Alignment:
Q  76 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||    
T  47463873 atctgcattcagggactaaagtgactactcatttcccatccagggactaaagtg 47463820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 47144821 - 47144877
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaaca 73  Q
    ||||||| |||||||| || ||||| | |||||||||||||||||||||||| ||||    
T  47144821 atttagttcctgaatgcagactccgttggtcactttagtccttgaaattgactaaca 47144877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 2634168 - 2634209
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  2634168 aaattgacgaacagagtctgcattcagggactaaattgacta 2634209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 9826764 - 9826833
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||| ||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| ||||    
T  9826764 atttaatccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttca 9826833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 47943595 - 47943526
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||| ||||||||||||| ||  | || ||||| |||||| | ||||||||||||| ||||||||||||    
T  47943595 atttaatccctgaatgtagactatgttaatcactatagtccctaaaattgaccaacaaaatctacattca 47943526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 10757691 - 10757723
Alignment:
Q  70 aacagaatctacattcagggactaaattgacta 102  Q
    |||||| ||||||||||||||||||||||||||    
T  10757691 aacagagtctacattcagggactaaattgacta 10757723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 10970862 - 10970894
Alignment:
Q  70 aacagaatctacattcagggactaaattgacta 102  Q
    |||||| ||||||||||||||||||||||||||    
T  10970862 aacagagtctacattcagggactaaattgacta 10970894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 469
Target Start/End: Original strand, 5853927 - 5854116
Alignment:
Q  280 ttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaagaattccaaatccaaa 379  Q
    |||||||||||||||| |||||||| |||||||| ||||| || ||||| |  ||||| || || |  || || ||||| |||||||| || || |||||    
T  5853927 ttacccaatcaagcatggctcctttttggttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaaa 5854026  T
Q  380 tacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcacatgtga 469  Q
     ||||| || ||||| |||||||||||||| || || ||||| || || || || |||||||||||||||||||| ||||| ||||||||    
T  5854027 cacatcagtcttctcggaggattgtcctgtggacagatattccggtgcaatatgccctacagttcctctcactgcagttgtgacatgtga 5854116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 27508708 - 27508783
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  27508708 atttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacagagtctacattcagggact 27508783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 14197606 - 14197538
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattc 85  Q
    |||||||| || ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  14197606 atttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacagaatctacattc 14197538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 36150948 - 36151019
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    |||||||| |||||||||  ||||| |||||| |||||||||||||||||||||||| | ||||||||||||    
T  36150948 atttagtctctgaatgtaaactccgttagtcattttagtccttgaaattgaccaacaaagtctacattcagg 36151019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 5080256 - 5080187
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||| ||||||||||| ||||| || ||| ||||||||||||||||||| |||||| ||||||||||    
T  5080256 atttagtacctgaatgtagactccgttaatcattttagtccttgaaattgactaacagagtctacattca 5080187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 6441491 - 6441417
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| || ||||||| ||||| |||||||||| ||||||||||||||| || ||| ||||||||||||||||    
T  6441491 atttagtctctaaatgtagactccgttagtcacttttgtccttgaaattgactaa-agagtctacattcagggact 6441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 43257411 - 43257336
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||| ||||||| || || |||||| |||| ||| ||||||||||||||| ||||||||||||| ||||    
T  43257411 atttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaacaaaatctacattcagagact 43257336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 15000778 - 15000853
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||| ||||||| ||||| | | ||||||||||| ||||||||||||| | | |||||||| |||||||    
T  15000778 atttagtcccttaatgtagactccgttggacactttagtccctgaaattgaccaataaagtctacatttagggact 15000853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 45012995 - 45012928
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacatt 84  Q
    ||||| || |||||||||| ||||| || |||||||||||| ||||||||||||| ||| ||||||||    
T  45012995 atttaatctctgaatgtagactccgctaatcactttagtccctgaaattgaccaatagagtctacatt 45012928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 27508797 - 27508849
Alignment:
Q  77 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  27508797 tctacgttcagggactaaagtgactactccttttccattcagggattaaagtg 27508849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 45012903 - 45012855
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| ||||||    
T  45012903 cattcagagactaaagtgactactcctttcccattcagggaccaaagtg 45012855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 38761139 - 38761068
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    |||||||||||||||| || ||| | |||||||||||||||   ||||||| ||||||| ||||||| ||||    
T  38761139 atttagtccctgaatgcagactctgttagtcactttagtcccaaaaattgatcaacagagtctacatccagg 38761068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 6441488 - 6441529
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  6441488 aaattgactaacagagtctgcattcagggactaaattgacta 6441529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 15272435 - 15272394
Alignment:
Q  52 tagtccttgaaattgaccaacagaatctacattcagggacta 93  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  15272435 tagtccctgaaattgaccaacaaagtctacattcagggacta 15272394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 27508711 - 27508670
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  27508711 aaattgactaacagagtctgcattcagggactaaattgacta 27508670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 38761051 - 38761002
Alignment:
Q  77 tctacattcagggactaaattgactacacctttcccattcagggactaaa 126  Q
    |||||||||| | |||||| |||||||  |||||||||||||||||||||    
T  38761051 tctacattcacgaactaaagtgactacttctttcccattcagggactaaa 38761002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 5080163 - 5080115
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||| |||||| |||||||   |||||||||||||||||||||||    
T  5080163 cattcaggaactaaagtgactacttttttcccattcagggactaaagtg 5080115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 15000879 - 15000919
Alignment:
Q  89 gactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  15000879 gactaaagtgactactcatttcccattcagggactaaagtg 15000919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 15272377 - 15272329
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||| |||||| |||||||||||    
T  15272377 cattcagggactaaaatgactactcatttctcattcacggactaaagtg 15272329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 34419612 - 34419724
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggactaaattgactacacctttcccattc 116  Q
    ||||||||| | ||||||| ||| | | |||| |||||||| ||||||||||||||| | ||||||||||||||||||| ||||||| |||||| |||||    
T  34419612 atttagtccttaaatgtagactctgttggtcattttagtccctgaaattgaccaacaaagtctacattcagggactaaagtgactactcctttctcattc 34419711  T
Q  117 agggactaaagtg 129  Q
    | ||| |||||||    
T  34419712 aaggattaaagtg 34419724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 17497127 - 17497203
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggacta 93  Q
    ||||||||||||||||||| |||||   ||||||||||||| ||||||||||||||| | |||||||||||||||||    
T  17497127 atttagtccctgaatgtagactccgtcggtcactttagtccctgaaattgaccaacaaagtctacattcagggacta 17497203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 10760154 - 10760080
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||| | | ||||||||||||||    
T  10760154 atttagtccctgaatgtagactccgttaatca-tttagtccttgaaattgaccaacaaagtttacattcagggact 10760080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 30852711 - 30852786
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| ||||||||||  |||| ||||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  30852711 atttagtctctgaatgtagattccgttagtcactttagttcatgaaattgaccaacagagtctacaatcagggact 30852786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 2555573 - 2555646
Alignment:
Q  19 ttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||| |||| || || ||||||||||| ||| ||||||||||||||  | ||||||||||||||||    
T  2555573 ttagtccctgaacgtagacttcgttagtcactttaatccctgaaattgaccaacgcagtctacattcagggact 2555646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 20429996 - 20429955
Alignment:
Q  45 gtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  20429996 gtcactttagtccttgaaattgaccaacagagtctacattca 20429955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 21211471 - 21211423
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  21211471 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 21211423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 21211564 - 21211489
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| ||||||||||  | || ||||||||||||| | ||||||||||||||| | ||||||||||| ||||    
T  21211564 atttagtctctgaatgtagattgcgttagtcactttagttcctgaaattgaccaacaaagtctacattcagagact 21211489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 13753376 - 13753306
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcag 87  Q
    |||||| ||||||| |||| ||||   |||||||||||||| ||||||||||||||||| |||||| ||||    
T  13753376 atttagcccctgaaagtagactccatcagtcactttagtccctgaaattgaccaacagagtctacactcag 13753306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 19491804 - 19491873
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| ||||    
T  19491804 atttagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttca 19491873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 19564802 - 19564735
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacatt 84  Q
    |||||||| |||||||||| ||||  || |||||||||||| ||||||||| || |||| ||||||||    
T  19564802 atttagtctctgaatgtagactccattaatcactttagtccctgaaattgatcaccagagtctacatt 19564735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 17497220 - 17497268
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||| |||||| |||||||||||    
T  17497220 cattcagggactaaaatgactactcatttctcattcacggactaaagtg 17497268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 21943797 - 21943749
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||| |||||| ||||||| | ||||||||||| |||||||||||    
T  21943797 cattcaggtactaaagtgactactcatttcccattcaaggactaaagtg 21943749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 50335573 - 50335648
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||||| || |||||||||||| | ||||||||||||||| ||||||||||||||||    
T  50335573 atttagtccctgaatgtagactccgctaatcactttagtccctaaaattgaccaacagagtctacattcagggact 50335648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 37608104 - 37608178
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||| ||||||||| ||||| |||||||||| |||| ||||||||||||||||  | ||||||||||||||    
T  37608104 atttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacag-ttttacattcagggact 37608178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 13735589 - 13735653
Alignment:
Q  29 aatgtaggctccgatagtcactttagtccttgaaattga-ccaacagaatctacattcagggact 92  Q
    ||||||| ||||| ||||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  13735589 aatgtagactccgttagtcactttagtccctgaaattgatcaaacagagtctacattcagggact 13735653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 37608196 - 37608244
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  37608196 cattcagggactaaaatgactactcctttcccattcaaggactaaagtg 37608244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 11633288 - 11633337
Alignment:
Q  43 tagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||||||||||||| ||| ||| |||| |||||||    
T  11633288 tagtcactttagtccttgaaattgaccaatagagtctgcatttagggact 11633337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 8097862 - 8097806
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaaca 73  Q
    ||||||| ||||||||||| ||| | |||||| |||||||||| |||||||||||||    
T  8097862 atttagttcctgaatgtagactctgttagtcattttagtccttaaaattgaccaaca 8097806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 25149383 - 25149310
Alignment:
Q  19 ttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||| |||| | ||| | ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25149383 ttagtccctgaacgtagacaccgttcgtcactttagtccttgaaattgaccaacagagtctacattcagggact 25149310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 12107012 - 12106939
Alignment:
Q  19 ttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||| ||||||| || || | ||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  12107012 ttagtccctaaatgtagactgcgttcgtcactttagtccctgaaattgaccaacagagtctacatccagggact 12106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 35202738 - 35202806
Alignment:
Q  24 ccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||| ||||| ||||||||||||| | ||||||||||||||||| |  |||||||||||||    
T  35202738 ccctgaatgtagactccgttagtcactttagttcctgaaattgaccaacagagtaaacattcagggact 35202806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 21185793 - 21185867
Alignment:
Q  16 catttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcaggga 90  Q
    |||||||| ||||||||||  ||| | ||||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  21185793 catttagtacctgaatgtacactcagttagtcactttagtccatgaaattgaccaacagagtctatatttaggga 21185867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 12106921 - 12106873
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  12106921 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 12106873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 22326553 - 22326477
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggacta 93  Q
    ||||||| |||||||||||  |||| || |||||||||||| | ||||||||||| ||| |||||||||| ||||||    
T  22326553 atttagttcctgaatgtagattccgttaatcactttagtccctaaaattgaccaatagagtctacattcaaggacta 22326477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 18324129 - 18324204
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||| | ||||||| ||||| ||||||||||||| | |||||||||||| |||| || ||||||| |||||    
T  18324129 atttagtccttaaatgtagactccgttagtcactttagttcatgaaattgaccagcagagtcgacattcatggact 18324204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 21124491 - 21124566
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||  | ||||| ||||| ||| ||||||||||| | ||||||||||||||| |||||||||| |||||    
T  21124491 atttagtcccctagtgtagactccgttagccactttagtccataaaattgaccaacagagtctacattcaaggact 21124566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 22469579 - 22469505
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||| ||  ||||| ||||||| ||| ||| ||||||||||||||||| ||| ||||||||||||    
T  22469579 atttagtccctgaat-taaactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggact 22469505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 37543939 - 37543885
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaa 71  Q
    ||||||||||||||| ||| ||||| || |||||||||||| |||||||||||||    
T  37543939 atttagtccctgaatatagactccgttaatcactttagtccatgaaattgaccaa 37543885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 23976212 - 23976163
Alignment:
Q  43 tagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||| ||| |||||||||| |||||| ||||||||||||||||    
T  23976212 tagtcactttactccctgaaattgactaacagagtctacattcagggact 23976163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 31254039 - 31253998
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  31254039 aaattgactaacagagtctgcattcagggactaaattgacta 31253998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 35202733 - 35202692
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| |||||||||| |||||||| |||||||||||||    
T  35202733 aaattgactaacagaatctgcattcaggaactaaattgacta 35202692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 21185887 - 21185935
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||| ||||||| ||||||||||    
T  21185887 cattcagggactaaagtgactactcatttctcattcagcgactaaagtg 21185935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 22469491 - 22469439
Alignment:
Q  77 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||||||| || ||| || |||| ||||||||||||||||| |||||||    
T  22469491 tctacattcaggaacgaaagtggctactcctttcccattcagggattaaagtg 22469439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 22092992 - 22093067
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||| ||| ||||| | ||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  22092992 atttagtccctgaatatagactccgtttgtcactttagtccctgaatttgaccaacagaatctacattcagagact 22093067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 32092906 - 32092831
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| || || ||||||||||||| | ||| |||||| |||||| ||||||||||||||||    
T  32092906 atttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagtctacattcagggact 32092831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 39598654 - 39598585
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||||||||||||| ||||| ||||||||||||||| | |||||||| |||| | ||||||||||    
T  39598654 atttagtccctgaatgtagactccgttagtcactttagtccctaaaattgactaacaaagtctacattca 39598585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31820046 - 31820115
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    |||||||| |||||||||  ||||| || |||||||||||| | |||||||| |||||||||||||||||    
T  31820046 atttagtctctgaatgtatactccgttaatcactttagtccctaaaattgactaacagaatctacattca 31820115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 32092813 - 32092765
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  32092813 cattcagggactaaagtgactactcatttcccattcagggactaaagtg 32092765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 5066203 - 5066130
Alignment:
Q  369 ccaaatccaaatacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagt 442  Q
    ||||||||||| ||||||||||| || || || ||||| ||||| || || || ||||| ||||||||||||||    
T  5066203 ccaaatccaaaaacatctgttttttcagaagactgtccagttgagagatactcgggggcaatgtgtcctacagt 5066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 24007024 - 24006952
Alignment:
Q  20 tagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||| ||||||||||| ||| | || ||| |||||||  |||||||||  |||||| ||||||||||||||||    
T  24007024 tagtacctgaatgtagactctgttaatcattttagtctctgaaattgagtaacagagtctacattcagggact 24006952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 26705160 - 26705235
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||||||||||   ||| ||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  26705160 atttagtccctgaatgtagaacccgttagtcactttagtccctgaaattgaccaacaacgtctacattcagggact 26705235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 13536700 - 13536768
Alignment:
Q  24 ccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||| ||| | ||||||||||||||| |||||| |||||| ||| ||||||||||||||||    
T  13536700 ccctgaatgtagactctgttagtcactttagtccctgaaatggaccaatagagtctacattcagggact 13536768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 10672765 - 10672690
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| || || |||||||| |||| | ||||||| ||||||| | ||||||||||||||||    
T  10672765 atttagtccctgaatgtagacttcgttagtcactatagttcctgaaatttaccaacatagtctacattcagggact 10672690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 21222612 - 21222537
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| |||| |||||    
T  21222612 atttagtccctgaatgtagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaaggact 21222537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 25089284 - 25089355
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    ||||||||||||||||||| || |  ||||||||||||||| ||||||||||||||| | |||| |||||||    
T  25089284 atttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaacatagtctatattcagg 25089355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 478
Target Start/End: Original strand, 6211835 - 6212033
Alignment:
Q  280 ttacccaatcaagcatagctcctttctggttagcagctttcccgaattcaagagctctttgtccagaaatcaattcaagcagaagaattccaaatccaaa 379  Q
    ||||||||||||||||  ||||||| ||||| || ||||| || |||||||| || ||    || |  ||||||||||| || | ||| |||||||||||    
T  6211835 ttacccaatcaagcatgactcctttttggttggctgcttttccaaattcaagggccctcaaacctgtgatcaattcaagaagcaaaatgccaaatccaaa 6211934  T
Q  380 tacatctgttttctctgaggattgtcctgttgataggtattcaggggctatgtgtcctacagttcctctcactgctgttgtcacatgtgagtctctgtg 478  Q
     ||||| || || || || ||||||||||| || || || ||||| ||||| || ||||| || || |||||||| ||||| |||||||| ||| ||||    
T  6211935 aacatcagtcttttcagaagattgtcctgtggaaagatactcaggagctatatgccctactgtccccctcactgcagttgttacatgtgaatctttgtg 6212033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19295428 - 19295372
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaaca 73  Q
    ||||||||||||||||||| ||||| | ||||||||||||| |||||||||| ||||    
T  19295428 atttagtccctgaatgtagactccgttggtcactttagtccctgaaattgactaaca 19295372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 10588008 - 10587959
Alignment:
Q  43 tagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||| ||||||||| ||||| | ||||||||||||||||    
T  10588008 tagtcactttagtccctgaaattgaacaacatagtctacattcagggact 10587959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 10587941 - 10587893
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| |||||| |||||| |||||||||||    
T  10587941 cattcagggactaaagtgactactcctttctcattcatggactaaagtg 10587893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 19295335 - 19295287
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| ||||||| ||||| |||||||||||    
T  19295335 cattcagggactaaagtgactactcctttcctattcaaggactaaagtg 19295287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 26705249 - 26705301
Alignment:
Q  77 tctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||||||| ||||||| | ||| ||||||||| |||||||||    
T  26705249 tctacattcagggactaaagtgactactctttttccattcaggaactaaagtg 26705301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 10862145 - 10862199
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaa 71  Q
    ||||||||||||||| ||| ||| | | ||||||||||||| |||||||||||||    
T  10862145 atttagtccctgaatatagactctgttcgtcactttagtccctgaaattgaccaa 10862199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 19295397 - 19295434
Alignment:
Q  65 tgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||||||| || ||||||||||||||||||||||||||    
T  19295397 tgaccaacggagtctacattcagggactaaattgacta 19295434  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 15031352 - 15031427
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| | |||| ||| |||||||    
T  15031352 atttagtcactgaatgtagactccgttagtcactttagtccctgaaattgaccaacaaagtctagatttagggact 15031427  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 11989192 - 11989117
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||| | ||||||| ||||| ||| ||||||||||  ||||||||||||||||| |||| |||||||||||    
T  11989192 atttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacagagtctatattcagggact 11989117  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 14434787 - 14434712
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| |||||||||| ||||| ||||||||||||||| ||||||| || |||| | |||||||||| |||||    
T  14434787 atttagtctctgaatgtagactccgctagtcactttagtccctgaaattaactaacaaagtctacattcaaggact 14434712  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 26498695 - 26498620
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||| ||||||| |  ||||| ||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  26498695 atttagtcactgaatgcatactccgttagtcactttagtccctgaaattgaccaacatggtctacattcagggact 26498620  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 26498602 - 26498554
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  26498602 cattcagggactaaagtgactactcttttcccattcagggactaaagtg 26498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 36383130 - 36383208
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggactaaa 95  Q
    |||||||| |||||| ||| || || ||||||||||||||| | |||||||| |||||| | | |||||||||||||||    
T  36383130 atttagtctctgaatatagacttcgttagtcactttagtccctaaaattgactaacagagtttgcattcagggactaaa 36383208  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 7300198 - 7300137
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatc 78  Q
    ||||| ||||| |||| || ||| | |||||||||||||||||||| |||||||||||||||    
T  7300198 atttaatccctaaatgcagactctgttagtcactttagtccttgaatttgaccaacagaatc 7300137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 39541768 - 39541817
Alignment:
Q  43 tagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  39541768 tagtcacttttgtccttaaaattgaccaacagagtctacattcagagact 39541817  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 15031445 - 15031493
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||| ||||||| ||||||| | |||||||||||||||||||||||    
T  15031445 cattcagagactaaagtgactactcatttcccattcagggactaaagtg 15031493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 38498235 - 38498311
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggacta 93  Q
    ||||||||||||||||||| |||   ||||||||||||||| | ||||| || |||| | ||||||||||| |||||    
T  38498235 atttagtccctgaatgtagactctattagtcactttagtccctaaaattaactaacaaagtctacattcagagacta 38498311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 38498328 - 38498376
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||||||| ||||||| |||||| |||||||||| |||||||    
T  38498328 cattcagggactaaagtgactactcctttctcattcagggattaaagtg 38498376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 21514876 - 21514951
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||| ||||||| | ||| | |||| |||||| ||| ||||||||||||| | | ||||||||||||||||    
T  21514876 atttagtccttgaatgtggactctgttagttactttaatccatgaaattgaccaatatagtctacattcagggact 21514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 44967987 - 44968062
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||  ||||||||| |||   ||||||||||| ||| ||||||||||||||| | |||||||| |||||||    
T  44967987 atttagtctttgaatgtagactctcttagtcactttaatccctgaaattgaccaacaaagtctacatttagggact 44968062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 20759085 - 20759135
Alignment:
Q  43 tagtcactttagtccttgaaattgaccaacagaatctacattcagggacta 93  Q
    ||||||||||||||| |||||||||| |||| | |||||||||| ||||||    
T  20759085 tagtcactttagtccctgaaattgactaacaaagtctacattcaaggacta 20759135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 41985049 - 41984983
Alignment:
Q  20 tagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    |||||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| ||||    
T  41985049 tagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttca 41984983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 20759152 - 20759197
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaa 126  Q
    |||||| |||||||| ||||||| |||||| |||||||||||||||    
T  20759152 cattcaaggactaaaatgactactcctttctcattcagggactaaa 20759197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 21514964 - 21515017
Alignment:
Q  76 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    ||||||||||| |||||||| ||||||| | ||||| |||||||||| ||||||    
T  21514964 atctacattcaaggactaaaatgactactcatttccaattcagggacaaaagtg 21515017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 26920287 - 26920356
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||| | ||||||||||||  ||||||||||| ||| ||||||||| ||||| | | ||||||||    
T  26920287 atttagtccttaaatgtaggctccattagtcactttaatccctgaaattgatcaacaaagtatacattca 26920356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 48755386 - 48755333
Alignment:
Q  76 atctacattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||| ||||||| ||||||| |||| || ||||||| |||||||||||||||||    
T  48755386 atctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtg 48755333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 48755459 - 48755531
Alignment:
Q  17 atttagtccctgaatgtaggctcc-gatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    ||||||||| ||||||||| |||  | ||||||||||   || ||||||||||||||||| ||||||||||||    
T  48755459 atttagtccatgaatgtagactcgtgttagtcactttgacccctgaaattgaccaacagagtctacattcagg 48755531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 27628 - 27569
Alignment:
Q  25 cctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacatt 84  Q
    ||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||    
T  27628 cctgaatgtagacttcgttcgtcactttagtccttgaaattgaccaacagagtctacatt 27569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 314210 - 314277
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacatt 84  Q
    |||||||||||||||||||  || | ||||||||||||||| ||||||| ||||||||| ||||||||    
T  314210 atttagtccctgaatgtagagtctgttagtcactttagtccctgaaattaaccaacagagtctacatt 314277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 314241 - 314204
Alignment:
Q  65 tgaccaacagaatctacattcagggactaaattgacta 102  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  314241 tgactaacagactctacattcagggactaaattgacta 314204  T

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Target: scaffold0102 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 24052 - 24097
Alignment:
Q  45 gtcactttagtccttgaaattgaccaacagaatctacattcaggga 90  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  24052 gtcacttttgtccatgaaattgaccaacagaatctacattcaggga 24097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 24027 - 23986
Alignment:
Q  61 aaattgaccaacagaatctacattcagggactaaattgacta 102  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  24027 aaattgaccaacagagtctgcattcagggactaaattgacta 23986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 72135 - 72184
Alignment:
Q  80 acattcagggactaaattgactacacctttcccattcagggactaaagtg 129  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  72135 acattcagggactaaagtgactacttctttcccattcagggactaaagtg 72184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 72014 - 72089
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    |||||||||||||||| |  ||  | |||||| |||||||| |||||||||||| || ||||||||||||||||||    
T  72014 atttagtccctgaatgcaaactttgttagtcaatttagtccctgaaattgaccatcaaaatctacattcagggact 72089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 1482 - 1557
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagggact 92  Q
    ||||||||||||||||||| |||   ||||||| ||| |||||||||||||| |||||| ||||| |||| |||||    
T  1482 atttagtccctgaatgtagactcaattagtcacattaatccttgaaattgactaacagagtctacgttcaaggact 1557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 982 - 911
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    ||||| ||||||||||||| ||  | ||||||||||||||| |||||||||| || ||| ||||||||||||    
T  982 atttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacattcagg 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 7446 - 7375
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattcagg 88  Q
    ||||| ||||||||||||| ||  | ||||||||||||||| |||||||||| || ||| ||||||||||||    
T  7446 atttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacattcagg 7375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 57581 - 57650
Alignment:
Q  17 atttagtccctgaatgtaggctccgatagtcactttagtccttgaaattgaccaacagaatctacattca 86  Q
    ||||||||||||||| ||| ||| | ||||||| ||| |||||||||||||| |||||| ||||| ||||    
T  57581 atttagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttca 57650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 190232 - 190187
Alignment:
Q  81 cattcagggactaaattgactacacctttcccattcagggactaaa 126  Q
    ||||||| ||||||| ||||||| | ||||||||||||||||||||    
T  190232 cattcagagactaaaatgactactcttttcccattcagggactaaa 190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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