View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_8 (Length: 471)
Name: NF18305_low_8
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 63 - 355
Target Start/End: Complemental strand, 32435841 - 32435549
Alignment:
| Q |
63 |
gtagcttgagatgaaagtttcaaagccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatc |
162 |
Q |
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| T |
32435841 |
gtagcttgagatgaaagtttcagagccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatc |
32435742 |
T |
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| Q |
163 |
tcttccatatccactcatcttataccctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgag |
262 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32435741 |
tcttccatatccactcattttataccctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgag |
32435642 |
T |
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| Q |
263 |
actgtatttgcaatatccaaattctttgtcacaatccctgctgctaggccatatttggtattgttggctttcttaattccttcatcaatggtc |
355 |
Q |
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| T |
32435641 |
actgtatttgcaatatccaaattctttgtcacaatccctgctgctaggccatatttggtattgttggctttcttaattccttcctcaatggtc |
32435549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 81 - 327
Target Start/End: Original strand, 32405799 - 32406045
Alignment:
| Q |
81 |
ttcaaagccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatctcttccatatccactcat |
180 |
Q |
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| T |
32405799 |
ttcaaagccaaggagaattgtaaatgggagttacaacagatttaacttgcaaatatttatgtaatgattccaatccaaaatctcttccaaacccactcat |
32405898 |
T |
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| Q |
181 |
cttataccctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgagactgtatttgcaatatcc |
280 |
Q |
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| T |
32405899 |
cttgtaacctccataaggaatatcatttccaaaggcaaagtagcaattaatccaaataattcctgctctaatggaccttgacacagtgtttgctatatcc |
32405998 |
T |
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| Q |
281 |
aaattctttgtcacaatccctgctgctaggccatatttggtattgtt |
327 |
Q |
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| T |
32405999 |
aaattctttgtcacaattcctgctgctaagccatattttgtattgtt |
32406045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 32435166 - 32435102
Alignment:
| Q |
355 |
cttgaacttagaaagtgccataacaggtccaaatatttcatcttgtgctattaacatgtcatcct |
419 |
Q |
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| T |
32435166 |
cttgaacttagaaagtgccataacaggtccaaatatttcatcttgtgctattaacatgtcatcct |
32435102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 417 - 460
Target Start/End: Complemental strand, 32435006 - 32434963
Alignment:
| Q |
417 |
ccttaacattggtaaaaatagtaggttcaatgtagtatcctttg |
460 |
Q |
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| T |
32435006 |
ccttaacattggtaaaaatagtaggttcaatgtagtatcctttg |
32434963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 32406552 - 32406589
Alignment:
| Q |
368 |
agtgccataacaggtccaaatatttcatcttgtgctat |
405 |
Q |
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| T |
32406552 |
agtgccatgacagggccaaatatttcatcttgtgctat |
32406589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 86 - 351
Target Start/End: Complemental strand, 43621909 - 43621644
Alignment:
| Q |
86 |
agccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatctcttccatatccactcatcttat |
185 |
Q |
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| T |
43621909 |
agccagggagaattataaatgggagtaacaacagatttaacttgtagatacttgtgaagggcttctaatccataatctcttccaaatccactcattttat |
43621810 |
T |
|
| Q |
186 |
accctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgagactgtatttgcaatatccaaatt |
285 |
Q |
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| T |
43621809 |
atcctccaaaaggaatatcatctccaaaagcaaaataacagtttatccaaatagtgcctgcacgaatggatcttgacactgtgtttgcaatatccaaatt |
43621710 |
T |
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| Q |
286 |
ctttgtcacaatccctgctgctaggccatatttggtattgttggctttcttaattccttcatcaat |
351 |
Q |
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| T |
43621709 |
ctttgtcacaatacctgctgctagtccatatcttgtattattagcactcttaattgcttcctcaat |
43621644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 81 - 339
Target Start/End: Complemental strand, 43628366 - 43628108
Alignment:
| Q |
81 |
ttcaaagccatggagaattgtaaataggagttgcaacagatttaacttgaagatacttgtgaagtgcttccaatccataatctcttccatatccactcat |
180 |
Q |
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|||||||||| ||||||||||||||||| ||| ||| ||||||||||| | ||||||||||| ||||| ||||| | |||||||||| |||||||||| |
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| T |
43628366 |
ttcaaagccagggagaattgtaaataggtgttacaatggatttaacttgtaagtacttgtgaagagcttctaatccctgatctcttccaaatccactcat |
43628267 |
T |
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| Q |
181 |
cttataccctccaaaagggcaatcaatatcaaaggcaaaatagcaattgatccaaatgatacctgcacgaattgaccttgagactgtatttgcaatatcc |
280 |
Q |
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||||| ||||||||||| ||| | | | ||||| ||| | ||||||||||| || |||||||| || |||||||| || || |||||||||||| |
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| T |
43628266 |
tttatatcctccaaaaggaatgtcacttcccacggcaagataagagttgatccaaataatgcctgcacggatggaccttgaaacagtgtttgcaatatcc |
43628167 |
T |
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| Q |
281 |
aaattctttgtcacaatccctgctgctaggccatatttggtattgttggctttcttaat |
339 |
Q |
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|| ||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43628166 |
aagttcttggtcacaatgcctgctgctaggccatatctggtattgttggcactcttaat |
43628108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 43621247 - 43621191
Alignment:
| Q |
368 |
agtgccataacaggtccaaatatttcatcttgtgctattaacatgtcatccttaaca |
424 |
Q |
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|||||||| ||||| |||||||||||||| |||||||| | ||| ||||||| |||| |
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| T |
43621247 |
agtgccatcacaggaccaaatatttcatcctgtgctataaccatatcatcctaaaca |
43621191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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