View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18305_low_9 (Length: 426)
Name: NF18305_low_9
Description: NF18305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18305_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 29613202 - 29612792
Alignment:
| Q |
18 |
aaattatgtccaaataccagtcttgctatttccattgtccatatatatatggattaaacaatcccctacaatgctacaacacttatagaatttgtttcat |
117 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29613202 |
aaattatgcccaaataccagtcttgttatttccattgtccatatatatatggattaaacaatcccttacaatgctacaacacttatagaatttgtttcat |
29613103 |
T |
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| Q |
118 |
gta---------------gatcacctccaccactagcaacctctgttatggaatctgaagaacagtgaatatcttgaccttcactagatacatctttttg |
202 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29613102 |
gtataatgtctacatgtagatcacctccatcactagcaacctctgttatggaatctgaagaacagtgaatatcttgaccttcactagatacctctttttg |
29613003 |
T |
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| Q |
203 |
gcaatctggatatgactcaataataacctgactaatttcgttgccaacatcaacatctggttgacctacattaccaacctctggatcagaacctgaagat |
302 |
Q |
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| T |
29613002 |
gcaatctggatatgactcaataataacttgactaatttcgttgccaacatcaacatctggttgacctacattaccaacctctggatcagaacctgaagat |
29612903 |
T |
|
| Q |
303 |
tcatcaattatttgatccgtgtcgacctcatcttgggaatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagca |
402 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29612902 |
tcatcaataatttgatccgtgtcgacctcatcttgggaatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaaaatcagca |
29612803 |
T |
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| Q |
403 |
tccaattgatg |
413 |
Q |
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| T |
29612802 |
tccaattgatg |
29612792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 121 - 413
Target Start/End: Complemental strand, 29525283 - 29525003
Alignment:
| Q |
121 |
gatcacctccaccactagcaacctctgttatggaatctgaagaacagtgaatatcttgaccttcactagatacatctttttggcaatctggatatgactc |
220 |
Q |
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|||||| ||||| ||||||||| |||| ||||| | ||||| | || |||| ||||||||||||||||||| |||| |||| |||| ||||||| || |
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| T |
29525283 |
gatcacttccacaactagcaacttctggtatggtaactgaa---ctgtcaataacttgaccttcactagatacctcttgttggttatctagatatgaatc |
29525187 |
T |
|
| Q |
221 |
aataataacctgactaatttcgttgccaacatcaacatctggttgacctacattaccaacctctggatcagaacctgaagattcatcaattatttgatcc |
320 |
Q |
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||||||||| |||| ||| | | ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29525186 |
aataataacacgact---ttcatgggcaacatc------tggttgaactgtattaccaacctctggatcagaacctgaagattcatcaataatttgatcc |
29525096 |
T |
|
| Q |
321 |
gtgtcgacctcatcttgggaatgtgaagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatg |
413 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||| |
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| T |
29525095 |
ctgtcgacctcttcttggtaatgcgaagacgaatgcataacaaagagcgggcaaccaaagattatagcaaccgaaatcagcatccaattgatg |
29525003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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