View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18306_high_13 (Length: 370)

Name: NF18306_high_13
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18306_high_13
NF18306_high_13
[»] chr7 (16 HSPs)
chr7 (14-365)||(7808556-7808903)
chr7 (275-337)||(1719634-1719696)
chr7 (275-361)||(41747026-41747112)
chr7 (286-352)||(21529213-21529279)
chr7 (277-357)||(43368970-43369050)
chr7 (275-361)||(2273354-2273438)
chr7 (265-324)||(4567837-4567896)
chr7 (289-356)||(27229031-27229098)
chr7 (267-336)||(10025918-10025987)
chr7 (279-356)||(28226737-28226814)
chr7 (275-359)||(14734679-14734763)
chr7 (265-356)||(2798789-2798880)
chr7 (315-361)||(4962694-4962741)
chr7 (265-324)||(37124633-37124692)
chr7 (287-353)||(21533769-21533835)
chr7 (267-356)||(41690207-41690296)
[»] scaffold0258 (1 HSPs)
scaffold0258 (26-190)||(19820-19982)
[»] chr3 (16 HSPs)
chr3 (120-190)||(28672672-28672742)
chr3 (271-358)||(23272459-23272546)
chr3 (277-356)||(1405302-1405380)
chr3 (265-356)||(22722254-22722345)
chr3 (286-357)||(39493072-39493143)
chr3 (284-356)||(6749363-6749435)
chr3 (265-356)||(45647015-45647106)
chr3 (265-336)||(296891-296962)
chr3 (265-304)||(9589230-9589269)
chr3 (275-334)||(29556156-29556215)
chr3 (265-323)||(19229366-19229424)
chr3 (285-359)||(20140616-20140690)
chr3 (265-355)||(27371495-27371585)
chr3 (262-356)||(45667856-45667950)
chr3 (314-357)||(25841605-25841649)
chr3 (273-329)||(29174234-29174290)
[»] chr6 (11 HSPs)
chr6 (275-356)||(31660871-31660952)
chr6 (276-323)||(31656042-31656089)
chr6 (279-356)||(4123098-4123175)
chr6 (265-323)||(25057019-25057077)
chr6 (275-356)||(23410953-23411034)
chr6 (285-356)||(8049676-8049747)
chr6 (285-356)||(8049779-8049850)
chr6 (279-356)||(31871513-31871593)
chr6 (265-318)||(21013204-21013257)
chr6 (265-361)||(2437333-2437429)
chr6 (262-334)||(6110728-6110800)
[»] scaffold0188 (1 HSPs)
scaffold0188 (265-356)||(5706-5797)
[»] chr4 (9 HSPs)
chr4 (265-336)||(53370159-53370230)
chr4 (265-338)||(24073442-24073515)
chr4 (275-326)||(20782894-20782945)
chr4 (257-356)||(31104853-31104949)
chr4 (275-321)||(2685076-2685122)
chr4 (286-357)||(29961277-29961350)
chr4 (275-336)||(22349383-22349443)
chr4 (265-361)||(9808035-9808131)
chr4 (296-356)||(30912827-30912887)
[»] chr8 (10 HSPs)
chr8 (262-356)||(14896995-14897089)
chr8 (265-337)||(39140079-39140152)
chr8 (262-356)||(34039301-34039395)
chr8 (279-356)||(11087586-11087663)
chr8 (279-356)||(30887522-30887599)
chr8 (265-361)||(27232092-27232188)
chr8 (315-361)||(9455513-9455560)
chr8 (265-334)||(7695002-7695071)
chr8 (279-323)||(3742189-3742233)
chr8 (281-333)||(32234135-32234187)
[»] chr1 (8 HSPs)
chr1 (265-357)||(45925833-45925925)
chr1 (285-364)||(21965754-21965833)
chr1 (260-361)||(10430187-10430288)
chr1 (262-356)||(1453993-1454085)
chr1 (103-182)||(11958148-11958227)
chr1 (265-336)||(11795571-11795642)
chr1 (311-361)||(39157263-39157313)
chr1 (265-325)||(41117440-41117500)
[»] chr5 (4 HSPs)
chr5 (286-337)||(14967813-14967864)
chr5 (275-356)||(17592033-17592113)
chr5 (279-324)||(28620501-28620546)
chr5 (286-358)||(42673599-42673671)
[»] chr2 (10 HSPs)
chr2 (275-356)||(1405830-1405910)
chr2 (275-356)||(44898603-44898684)
chr2 (265-329)||(13588489-13588553)
chr2 (279-324)||(29408450-29408495)
chr2 (265-356)||(11084318-11084409)
chr2 (265-356)||(16806132-16806223)
chr2 (265-356)||(16845413-16845504)
chr2 (265-332)||(25713919-25713986)
chr2 (265-330)||(21253028-21253093)
chr2 (275-323)||(36243630-36243678)
[»] scaffold1327 (1 HSPs)
scaffold1327 (279-356)||(1196-1273)
[»] scaffold0637 (1 HSPs)
scaffold0637 (275-356)||(3774-3855)
[»] scaffold0841 (1 HSPs)
scaffold0841 (265-334)||(3939-4008)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 365
Target Start/End: Original strand, 7808556 - 7808903
Alignment:
Q  14 cactccgttcgtagtggatatcatttgtgtaagaatgaactccttgatacttcacacttcaaaaagcaagggtcgtggcagttgttatggaatcttaaag 113  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7808556 cactccgttcctagtgcatatcatttgtgtaagaatgaactccttgatacttcacacttcaaaaagcaagggtcgtggcagttgttatggaatcttaaag 7808655  T
Q  114 attcatcaaaagtttaaaatcttctttggcgcgtttgtaggaattgcttaccaacgggattgagaatccgagacaagtgttgttttggaaaagtaattaa 213  Q
     | || |||||||| ||||||| ||||  ||| ||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||    |||    
T  7808656 ctccaccaaaagttaaaaatctcctttaacgcatttgtaggaattgtttatcaacgcgattgagaatccgagataagtgttgttttggaaaag----taa 7808751  T
Q  214 gaccaaattaaggaagtgaatttttgcaccttttttccccttcctaacttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctc 313  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  7808752 gaccaaattaaggaagtgaatttttgcacattttttccccttcctaattttttgcacaaaatttctcttttcaataaatttaatatgttatatttctctc 7808851  T
Q  314 ataacaaacaaatgttagttactccctctttctccaacaaatttttatattc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7808852 ataacaaacaaatgttagttactccctctttctccaacaaatttttatattc 7808903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 1719634 - 1719696
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactc 337  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||    
T  1719634 tttctcttttcaataaatttaatgtgttatctatccctcatcacaaacaattgttagttactc 1719696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 41747026 - 41747112
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    ||||||||||||||||||||||| | |||| |||| ||| |||||||||| |||||||||||   | |||||| |||||||||||||    
T  41747026 tttctcttttcaataaatttaatattttatctttctctcgtaacaaacaattgttagttactatatttttctctaacaaatttttat 41747112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 21529213 - 21529279
Alignment:
Q  286 aataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaaca 352  Q
    ||||||| |||| |||||| |||| |||||||||||||| |||||||||||| ||| ||||||||||    
T  21529213 aataaatctaatatgttatctttctctcataacaaacaattgttagttactctctccttctccaaca 21529279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 43369050 - 43368970
Alignment:
Q  277 tctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattt 357  Q
    ||||||||||||||||||||| |||||| |||| ||| |||||| ||| ||||||||| |   | ||||||||||||||||    
T  43369050 tctcttttcaataaatttaatatgttatttttctctcgtaacaagcaattgttagttattatttttttctccaacaaattt 43368970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 2273354 - 2273438
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    ||||||||||||||||||||||  |||||| |||| ||| |||||||||| ||||||||| |  || ||||| ||||||||| ||||    
T  2273354 tttctcttttcaataaatttaa--tgttatctttctctcgtaacaaacaattgttagttattatctttttcttcaacaaattcttat 2273438  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 4567896 - 4567837
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaa 324  Q
    ||||||| | ||| ||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  4567896 ttgcacacactttatctttccaataaatttaatatgttatatttctctcataacaaacaa 4567837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 27229031 - 27229098
Alignment:
Q  289 aaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||||||||||||| |||  | |||||||||||| |||||||||||| || ||||| |||||||||    
T  27229031 aaatttaatgtgttatctttatcacataacaaacaattgttagttactctctttttcttcaacaaatt 27229098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 10025918 - 10025987
Alignment:
Q  267 gcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttact 336  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||  |  |||||||||| ||||| |||||    
T  10025918 gcacacaatttctcttttcaataaatttaatatgttatctttcttttgtaacaaacaattgttaattact 10025987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 28226814 - 28226737
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||| ||||||||||||| |||||| ||||  || |||||||||| ||||||||| |  || |||||||||||||||    
T  28226814 tctttccaataaatttaatatgttatctttctatcgtaacaaacaattgttagttaatatctttttctccaacaaatt 28226737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 14734679 - 14734763
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattttt 359  Q
    ||||| ||| |||||||||| ||||||||| |||| || ||||||||||| ||||| |||||| || || || |||||| |||||    
T  14734679 tttctttttccaataaatttgatgtgttatttttctctgataacaaacaattgttatttactctcttttccttcaacaatttttt 14734763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 2798880 - 2798789
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | |||||||||  |||||||||||| |||||| |||| ||| |||||||||| | ||| |||||   | |||||||||||||||    
T  2798880 ttgcacacactttctctttctaataaatttaatatgttatctttcgctcgtaacaaacaatttttaattactatatttttctccaacaaatt 2798789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 361
Target Start/End: Original strand, 4962694 - 4962741
Alignment:
Q  315 taacaaacaaatgttagttactcc-ctctttctccaacaaatttttat 361  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||||    
T  4962694 taacaaacaattgttagttactactctctttctccaacaaatttttat 4962741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 37124692 - 37124633
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaa 324  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| |||| ||||||||||||||    
T  37124692 ttgcacacactttatctttccaataaatttaatatgttatctttctctcataacaaacaa 37124633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 21533769 - 21533835
Alignment:
Q  287 ataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaa 353  Q
    |||||||||||||  ||| |||| ||||||||||| || ||||||| |||| ||| |||||||||||    
T  21533769 ataaatttaatgtactatctttctctcataacaaataattgttagtgactctctccttctccaacaa 21533835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 41690296 - 41690207
Alignment:
Q  267 gcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| ||| | ||| ||||||||||||| ||||||||||  ||| |||||||||| ||| | ||| |  || |||||||||||||||    
T  41690296 gcacaaactttatatttccaataaatttaatatgttatatttatctcgtaacaaacaattgtcaattattatctttttctccaacaaatt 41690207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 19820 - 19982
Alignment:
Q  26 agtggatatcatttgtgtaagaatgaactccttgatacttcacacttcaaaaagcaagggtcgtggcagttgttatggaatcttaaagattcatcaaaag 125  Q
    |||| |||||||||||||| ||||||  ||||||||| ||| ||| |||||||||||||||||| || ||||||||||||| |||||| | ||   ||||    
T  19820 agtgcatatcatttgtgtatgaatgagatccttgataattcccacatcaaaaagcaagggtcgttgcggttgttatggaatattaaagctcca--caaag 19917  T
Q  126 tttaaaatcttctttggcgcgtttgtaggaattgcttaccaacgggattgagaatccgagacaag 190  Q
    || ||  ||| | |||||||| |||||||||||| ||||||||| || |||||||||||||||||    
T  19918 ttaaagttctccgttggcgcgcttgtaggaattgtttaccaacgcgagtgagaatccgagacaag 19982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 28672742 - 28672672
Alignment:
Q  120 caaaagtttaaaatcttctttggcgcgtttgtaggaattgcttaccaacgggattgagaatccgagacaag 190  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||| || ||||||| |||||||||    
T  28672742 caaaagttaaaaatctcctttggcgcgtttgtaggaattgtttaccaacgtgagtgagaattcgagacaag 28672672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 23272546 - 23272459
Alignment:
Q  271 aaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttt 358  Q
    ||||||||| |||||||||||||||||||| ||| |||| ||| |||||||||| ||||| |||||| ||||||| | ||||| ||||    
T  23272546 aaaatttcttttttcaataaatttaatgtgctatctttctctcctaacaaacaattgttaattactctctctttcgcgaacaattttt 23272459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 356
Target Start/End: Complemental strand, 1405380 - 1405302
Alignment:
Q  277 tctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| ||||||||||||| |||||| |||| ||| |||||||||| |||||||||||  || |||||||||||||||    
T  1405380 tctctttccaataaatttaatatgttatctttctctcgtaacaaacaattgttagttact-tctttttctccaacaaatt 1405302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 22722254 - 22722345
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||| ||||| ||||||||||||||||||||  ||| ||||||||  |||| |||||||||||| || ||||| |||||||||    
T  22722254 ttgcacacactttttctttccaataaatttaatgtgttatcattctctcataacttacaattgttagttactctctttttcttcaacaaatt 22722345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 357
Target Start/End: Complemental strand, 39493143 - 39493072
Alignment:
Q  286 aataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattt 357  Q
    |||||||||||||| |||| ||||  |||||| |||||| | |||||||||| |||||||||||||||||||    
T  39493143 aataaatttaatgtattatctttctttcataataaacaattattagttactctctctttctccaacaaattt 39493072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 356
Target Start/End: Complemental strand, 6749435 - 6749363
Alignment:
Q  284 tcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||||||||||| |||||| |||| ||  |||||||||| | |||||||||  ||||||||||||||||||    
T  6749435 tcaataaatttaatatgttatttttctcttgtaacaaacaatttttagttactatctctttctccaacaaatt 6749363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 45647106 - 45647015
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| |||| |||||||||||||| ||| | ||| |  || |||||||||||||||    
T  45647106 ttgcacacactttatctttccaataaatttaatatgttatctttctctcataacaaacaattgtcacttattatctttttctccaacaaatt 45647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 296962 - 296891
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttact 336  Q
    ||||||| | |||||||||||||| ||||||||  | ||| |||| |||||||||||||  |||||||||||    
T  296962 ttgcacacactttctcttttcaattaatttaatacggtatctttcgctcataacaaacatttgttagttact 296891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 9589269 - 9589230
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttat 304  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  9589269 ttgcacaaactttctcttttcaataaatttaatatgttat 9589230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 29556156 - 29556215
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagtta 334  Q
    ||||||||||||| ||| |||| |||||||||||| |||||||||| ||||  |||||||    
T  29556156 tttctcttttcaaaaaacttaacgtgttatatttctctcataacaaccaaaatttagtta 29556215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 19229366 - 19229424
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaaca 323  Q
    ||||||| | ||||||||| ||||||||||||| |||||| |||| || ||||||||||    
T  19229366 ttgcacagactttctctttccaataaatttaatatgttatttttctctgataacaaaca 19229424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 20140616 - 20140690
Alignment:
Q  285 caataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattttt 359  Q
    |||||||||||||||||||| || | ||| ||||||| || ||||| |||||| ||||||| | ||||| |||||    
T  20140616 caataaatttaatgtgttatcttgctctcctaacaaataattgttaattactctctctttcgcgaacaatttttt 20140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 27371585 - 27371495
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatt--tccctcataacaaacaaatgttagttactccctctttctccaacaaat 355  Q
    ||||||||||||||||||  ||||||||||| |||||||||||  |  || |||||||||||  || |  ||||| |||||||||||||||||    
T  27371585 ttgcacaaaatttctctt--caataaatttagtgtgttatatttatgtcttataacaaacaatagtcaagtactctctctttctccaacaaat 27371495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 45667950 - 45667856
Alignment:
Q  262 ttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||||||| | ||| ||||||||||||||||||| |||||| ||||   | |||||||||| ||| ||||| |   | |||||||||||||||    
T  45667950 ttcttgcacacactttatcttttcaataaatttaatatgttatctttcttccgtaacaaacaattgtcagttattatatttttctccaacaaatt 45667856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 25841605 - 25841649
Alignment:
Q  314 ataacaaacaaatgttagttact-ccctctttctccaacaaattt 357  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||    
T  25841605 ataacaaacaattgttagttactactctctttctccaacaaattt 25841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 29174234 - 29174290
Alignment:
Q  273 aatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgtt 329  Q
    ||||||||||| ||||||||||||||| |||| |||   ||||||||||||| ||||    
T  29174234 aatttctctttccaataaatttaatgtattatttttttttcataacaaacaattgtt 29174290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 31660952 - 31660871
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||| |||||||||||||||||||| |||| |||||| |||||||  ||||||||||| || ||||| |||||||||    
T  31660952 tttctctttccaataaatttaatgtgttatctttctctcatagcaaacaatcgttagttactctctttttcttcaacaaatt 31660871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 31656089 - 31656042
Alignment:
Q  276 ttctcttttcaataaatttaatgtgttatatttccctcataacaaaca 323  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  31656089 ttctcttttcaataaatttaatgtgttatatttctctcataacaaaca 31656042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 4123175 - 4123098
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||| | || |||||||  | ||||| |||||||||    
T  4123175 tctttccaataaatttaatgtgttatctttctctcataacaaacaattttttgttactctttatttcttcaacaaatt 4123098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Complemental strand, 25057077 - 25057019
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaaca 323  Q
    ||||||| | ||| ||||| |||||||||||||||||||| |||| |||||||||||||    
T  25057077 ttgcacacactttatctttccaataaatttaatgtgttatctttctctcataacaaaca 25057019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 23411034 - 23410953
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||| ||||||||||||| |||||| |||| ||| ||||||| |  | |||||||||  || |||||||||||||||    
T  23411034 tttctctttccaataaatttaatatgttatctttctctcgtaacaaatatttcttagttactatctttttctccaacaaatt 23410953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 8049747 - 8049676
Alignment:
Q  285 caataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||||||| |||||| |||| |||||||||||||| ||||  ||| |  || |||||||||||||||    
T  8049747 caataaatttaatatgttatctttctctcataacaaacaattgttgcttattatctttttctccaacaaatt 8049676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 356
Target Start/End: Complemental strand, 8049850 - 8049779
Alignment:
Q  285 caataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||||||| |||||| |||| |||||||||||||| ||||| ||| |  || |||||||| ||||||    
T  8049850 caataaatttaatatgttatctttctctcataacaaacaattgttacttattatctttttctccatcaaatt 8049779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 31871513 - 31871593
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaa---tgttagttactccctctttctccaacaaatt 356  Q
    |||||| |||| |||||||| ||||| |||| |||||||||||||||   ||||||||||||  ||| ||| |||||||||    
T  31871513 tcttttaaatagatttaatgggttatttttctctcataacaaacaaaatttgttagttactctttctctctgcaacaaatt 31871593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 21013204 - 21013257
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataac 318  Q
    ||||||||||||| ||| | |||||||||| ||||||||| |||| ||||||||    
T  21013204 ttgcacaaaatttatctctccaataaatttcatgtgttatctttctctcataac 21013257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 2437333 - 2437429
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| | || |||||||||||| | ||| | ||| |  || ||||| ||||||||||||||    
T  2437333 ttgcacacactttatctttccaataaatttaatatgttatctatctctcataacaaactattgtcaattattatctttttcttcaacaaatttttat 2437429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 6110728 - 6110800
Alignment:
Q  262 ttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagtta 334  Q
    |||||||||| | ||||  ||||||||||||||||| ||| || |||| ||  |||||||||| |||||||||    
T  6110728 ttcttgcacacactttccgttttcaataaatttaatatgtcatctttctcttgtaacaaacaattgttagtta 6110800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 5706 - 5797
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||||||||||||||||||||||| |||||| |||| ||  |||||||||  |||||||||||  || |||||||||||||||    
T  5706 ttgcacacactttctcttttcaataaatttaatatgttatttttctcttgtaacaaacatttgttagttactatctttttctccaacaaatt 5797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 53370159 - 53370230
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttact 336  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||| |||||  |||||||||||    
T  53370159 ttgcacaaattttctcttttcaataaatttaatatgttatatttctctcgtaataaacatttgttagttact 53370230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 24073442 - 24073515
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactcc 338  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||||| ||| |||||||||| ||| | |||||||    
T  24073442 ttgcacacactttatcttttcaataaatttaatatgttatatttctctcgtaacaaacaattgtcaattactcc 24073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 20782945 - 20782894
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaat 326  Q
    ||||||||||||||||||||||| |||||||| || |||| |||||||||||    
T  20782945 tttctcttttcaataaatttaatatgttatatgtctctcaaaacaaacaaat 20782894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 31104853 - 31104949
Alignment:
Q  257 ctaacttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| ||||||| | |||| |||||||||||||||||||  |  |||||  |||||||||||||| |||| ||||||| | ||| ||||||||||||    
T  31104853 ctaactttttgcacacactttcacttttcaataaatttaatgcct--tatttgtctcataacaaacaattgtttgttactctc-cttactccaacaaatt 31104949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 2685122 - 2685076
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaa 321  Q
    |||||||||||||||||||||| ||||||| |||| || ||||||||    
T  2685122 tttctcttttcaataaatttaacgtgttatctttctcttataacaaa 2685076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 29961277 - 29961350
Alignment:
Q  286 aataaatttaatgtgttatatttcc--ctcataacaaacaaatgttagttactccctctttctccaacaaattt 357  Q
    |||||| ||||||||||||||||    |||||||||||||| |||||||||||| | || | ||||||||||||    
T  29961277 aataaacttaatgtgttatatttttttctcataacaaacaattgttagttactctccctctttccaacaaattt 29961350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 22349443 - 22349383
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttact 336  Q
    ||||||||||||||||||| ||| |||||| |||| ||| ||| |||||| |||||||||||    
T  22349443 tttctcttttcaataaattaaatatgttatctttctctcgtaa-aaacaattgttagttact 22349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 9808131 - 9808035
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    ||||||| | ||| |||||  |||||||||||| |||||| |||| ||| |||||||||| | | ||||| |  || ||||||||||||||| ||||    
T  9808131 ttgcacacactttatctttctaataaatttaatatgttatctttctctcgtaacaaacaattatcagttattatctttttctccaacaaattcttat 9808035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 30912887 - 30912827
Alignment:
Q  296 atgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||| |||| ||| |||||||||  |||||||||||  || |||||||||||||||    
T  30912887 atgtgttatttttctctcgtaacaaacatttgttagttactatctttttctccaacaaatt 30912827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 14897089 - 14896995
Alignment:
Q  262 ttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||||   ||||||||||||||||||||||| ||||||||||| ||| |||||||||  |||||||| ||  || ||||||||| |||||    
T  14897089 ttcttgcacacgctttctcttttcaataaatttaatatgttatatttctctcgtaacaaacatttgttagttcctatctttttctccaaaaaatt 14896995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 39140079 - 39140152
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaa-tgttagttactc 337  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||  |||||||||| |||| ||||||||||||    
T  39140079 ttgcacaaaatttatcttttcaataaatttaatgtattatttttgtctcataacaatcaaattgttagttactc 39140152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 34039395 - 34039301
Alignment:
Q  262 ttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||||||| | ||||||||| |||||| |||||| | |||| |||| ||||||||||| |  |||||||||||   | |||||||||||||||    
T  34039395 ttcttgcacacattttctctttccaataagtttaatatattatctttctctcataacaaatatttgttagttactatatttttctccaacaaatt 34039301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 11087663 - 11087586
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||| |||||||||||  |||||| |||| || ||||||||||| ||| |||||||  || |||||||||||||||    
T  11087663 tctttttaataaatttaacatgttatctttctcttataacaaacaattgtcagttactatctttttctccaacaaatt 11087586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 30887522 - 30887599
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||| |||||||||||| ||| || |||| ||| |||||||||  |||||||||||  || |||||||||||||||    
T  30887522 tctttttaataaatttaatatgtaatttttctctcctaacaaacatttgttagttactatctttttctccaacaaatt 30887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 27232188 - 27232092
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    ||||||| | ||| |||||  |||||||||||| |||||| |||| ||| |||||||||| ||| ||||| |  || ||||||||||||||| ||||    
T  27232188 ttgcacacattttatctttcaaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctccaacaaattcttat 27232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 361
Target Start/End: Complemental strand, 9455560 - 9455513
Alignment:
Q  315 taacaaacaaatgttagttactcc-ctctttctccaacaaatttttat 361  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||||    
T  9455560 taacaaacaattgttagttactactctctttctccaacaaatttttat 9455513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 7695002 - 7695071
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagtta 334  Q
    ||||||| | ||| ||||||||||||||||||| |||||| |||| ||  |||||||||| ||| |||||    
T  7695002 ttgcacacactttatcttttcaataaatttaatatgttatctttctcttgtaacaaacaattgtcagtta 7695071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 3742233 - 3742189
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaaca 323  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||    
T  3742233 tctttccaataaatttaatatgttatatttttctcataacaaaca 3742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 32234187 - 32234135
Alignment:
Q  281 ttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagtt 333  Q
    |||| |||||||||||| |||||| |||| ||| |||||||||| ||||||||    
T  32234187 tttttaataaatttaatatgttatttttctctcgtaacaaacaattgttagtt 32234135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 45925925 - 45925833
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattt 357  Q
    ||||||| | ||||||||||||||||||||||| |||||| |||| ||| |||||||||  ||||||||| |  || |||||||||| |||||    
T  45925925 ttgcacacactttctcttttcaataaatttaatatgttatctttctctcctaacaaacatttgttagttattatctttttctccaaccaattt 45925833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 21965754 - 21965833
Alignment:
Q  285 caataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttttatatt 364  Q
    |||||||| ||||||||||| |||| || ||||||||||| ||||||| |||| || ||||| ||||||||| |||||||    
T  21965754 caataaatataatgtgttatctttctcttataacaaacaattgttagtcactctctttttcttcaacaaattcttatatt 21965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 361
Target Start/End: Original strand, 10430187 - 10430288
Alignment:
Q  260 acttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaattttt 359  Q
    |||| ||||||| | ||| ||||| |||||||||||||  ||||| |||| ||||||||||| || |||||||||||  || |||||||||| |||| ||    
T  10430187 actttttgcacacactttttctttccaataaatttaatacgttatctttctctcataacaaataattgttagttactatctttttctccaaccaattctt 10430286  T
Q  360 at 361  Q
    ||    
T  10430287 at 10430288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 356
Target Start/End: Original strand, 1453993 - 1454085
Alignment:
Q  262 ttcttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||||||||| |  ||||||||||||||||||||||  ||||| |||| |||| ||||||||  ||||||||  || |||| |||||||||||||    
T  1453993 ttcttgcacatatattctcttttcaataaatttaataagttatttttctctcacaacaaacagttgttagtt--tctctctctctccaacaaatt 1454085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 11958227 - 11958148
Alignment:
Q  103 gaatcttaaagattcatcaaaagtttaaaatcttctttggcgcgtttgtaggaattgcttaccaacgggattgagaatcc 182  Q
    ||||||||||| | || |||| ||| ||||||| |||||||| |||||||||||||| ||||||||| |  |||||||||    
T  11958227 gaatcttaaagctccaccaaatgttaaaaatctcctttggcgtgtttgtaggaattgtttaccaacgcgggtgagaatcc 11958148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 11795571 - 11795642
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttact 336  Q
    ||||||| | ||||||||| ||||||||||||| ||||||||||  || ||||||||||  | |||||||||    
T  11795571 ttgcacacactttctctttccaataaatttaatatgttatatttttcttataacaaacattttttagttact 11795642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 39157313 - 39157263
Alignment:
Q  311 ctcataacaaacaaatgttagttactccctctttctccaacaaatttttat 361  Q
    |||||||||||||| |||||||||||  |  ||||||||||||||||||||    
T  39157313 ctcataacaaacaattgttagttactatcattttctccaacaaatttttat 39157263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 41117500 - 41117440
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaa 325  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| |||| ||| |||||||||||    
T  41117500 ttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaaa 41117440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 14967864 - 14967813
Alignment:
Q  286 aataaatttaatgtgttatatttccctcataacaaacaaatgttagttactc 337  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  14967864 aataaatttaatgtgttatttttctctcataacaaacaattgttagttactc 14967813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 17592113 - 17592033
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||| ||| |||||||||| ||||||||| |||| || ||||||||||| ||||| |||||| || || || |||||||||    
T  17592113 tttctttttccaataaatttgatgtgttatttttctct-ataacaaacaattgttatttactctcttttccttcaacaaatt 17592033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 28620546 - 28620501
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaa 324  Q
    |||||||||||||||||||  |||||||||| ||| ||||||||||    
T  28620546 tcttttcaataaatttaataagttatatttctctcgtaacaaacaa 28620501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 42673599 - 42673671
Alignment:
Q  286 aataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatttt 358  Q
    |||||||||||| ||||||||||| ||||||||||| || |||  |||| |  || |||||| ||||||||||    
T  42673599 aataaatttaatatgttatatttctctcataacaaataattgtcggttattatctttttctctaacaaatttt 42673671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 1405830 - 1405910
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| |||||||||||||||||||||| |||  ||||||| |||||  |||||||||||| | || |||||||||||||    
T  1405830 tttctctgttcaataaatttaatgtgttat-tttttctcataagaaacatttgttagttactctccctctctccaacaaatt 1405910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 44898684 - 44898603
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    |||| ||||| |||||||||||| | |||| |||| ||| |||||||||| |||||||||||  ||||||||||| ||||||    
T  44898684 tttccctttttaataaatttaatatattatttttctctcgtaacaaacaattgttagttactttctctttctccaccaaatt 44898603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 13588553 - 13588489
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgtt 329  Q
    ||||| |||||||||||||  ||||||||||||||||||| || | |||||||||||||| ||||    
T  13588553 ttgcataaaatttctctttcaaataaatttaatgtgttattttcctctcataacaaacaattgtt 13588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 29408450 - 29408495
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaa 324  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  29408450 tcttttcaataaatttaatatgttatctttctctcataacaaacaa 29408495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 356
Target Start/End: Complemental strand, 11084409 - 11084318
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||||||||| ||||||||||||| |||||| |||| ||| |||||||||  ||||| ||| |   | |||||||||||||||    
T  11084409 ttgcacacactttctctttccaataaatttaatatgttatctttctctcgtaacaaacatttgttaattaatatttttttctccaacaaatt 11084318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 16806132 - 16806223
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| |||| ||| |||||||||| ||| ||||| |  || |||||| ||||||||    
T  16806132 ttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaatt 16806223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 356
Target Start/End: Original strand, 16845413 - 16845504
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||| | ||| ||||| ||||||||||||| |||||| |||| ||| |||||||||| ||| ||||| |  || |||||| ||||||||    
T  16845413 ttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaatt 16845504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 25713919 - 25713986
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagt 332  Q
    ||||||| | ||||||||| ||||||||||||| |||||| |||| ||| |||||||||  |||||||    
T  25713919 ttgcacacactttctctttccaataaatttaatatgttatctttctctcgtaacaaacatttgttagt 25713986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 21253093 - 21253028
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgtta 330  Q
    ||||||| | ||| ||||||||||||||||||| |||||| |||| ||  |||||||||| |||||    
T  21253093 ttgcacacactttatcttttcaataaatttaatatgttatttttctctagtaacaaacaattgtta 21253028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 36243630 - 36243678
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaaca 323  Q
    ||||||||| ||||||||||||| |||||| ||||  ||||||||||||    
T  36243630 tttctctttccaataaatttaatatgttatctttctttcataacaaaca 36243678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 356
Target Start/End: Complemental strand, 1273 - 1196
Alignment:
Q  279 tcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||||||||||||| |||||| |||| ||| |||||||||| ||| | ||| |  || |||||||||||||||    
T  1273 tcttttcaataaatttaatatgttatctttctctcttaacaaacaattgtcacttattatctttttctccaacaaatt 1196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 3855 - 3774
Alignment:
Q  275 tttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagttactccctctttctccaacaaatt 356  Q
    ||||||||| | ||||||||||| |||||| |||  ||||||||||| |||| ||||||| |  ||||||||| ||||||||    
T  3855 tttctctttccgataaatttaatatgttatctttgtctcataacaaataaattttagttattatctctttctctaacaaatt 3774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 3939 - 4008
Alignment:
Q  265 ttgcacaaaatttctcttttcaataaatttaatgtgttatatttccctcataacaaacaaatgttagtta 334  Q
    ||||||| | ||||||||| ||||||||||||  |||||| |||| ||| |||||||||  |||||||||    
T  3939 ttgcacacactttctctttccaataaatttaacatgttatttttctctcgtaacaaacatttgttagtta 4008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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