View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18306_high_15 (Length: 325)
Name: NF18306_high_15
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 37074512 - 37074802
Alignment:
| Q |
11 |
cagagacacaagctgaacaacatctcaactacaaggtaaaactcttgttccacctcttacttacatttcattcttcttcaactgcttctaaacttgttac |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37074512 |
cagaaacacaagctgaacaacatctcaactacaaggtaaa-cacttgttccacctcttacttacatttcattcttcttcaactgcttctaaacttgttac |
37074610 |
T |
|
| Q |
111 |
ttaccattttgttttgtctcagacaactgtgttgaaagtctccatccactgcgtaggctgcaagagaaaagtacacaaaattcttcaagccatacaaggt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37074611 |
ttaccatttt-----gtctcagacaactgtgttgaaagtctccatccactgcgtaggctgcaagagaaaagtacacaaaattcttcaagccatacaaggt |
37074705 |
T |
|
| Q |
211 |
aacctttttcatttcaaaatcaaaatcaaacnnnnnnnnaatcatcatcatcctctataaagggctattaatattattagtttttctcaactaggtgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37074706 |
aacctttttcatttcaaaatcaaaatcaaac-tttttttaatcatcgtcatcttctataaagggctattaatattattagtttttctcaactaggtgt |
37074802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University