View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_high_2 (Length: 606)
Name: NF18306_high_2
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 109 - 594
Target Start/End: Original strand, 14359803 - 14360281
Alignment:
| Q |
109 |
acttcattaaattcttctcatgagatgatatgtacctttcacaaacaatctcaggaaaataattcagcgaattgcaaattgtaattaggagtgtatgtgt |
208 |
Q |
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||||||||||||| || ||||||||||||||| || ||||||||||| |||||||| | || |||| ||||||| |||| ||| || |||| |
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| T |
14359803 |
acttcattaaattattttcatgagatgatatgcgcccttcacaaacaacctcaggaataagatccagcagattgcaa-------ttagaagtttacgtgt |
14359895 |
T |
|
| Q |
209 |
acataaatttgatattcattgaaccaaattatatacaaattgagactaaataataaggattgcatttcaaaaccaaaccagaagtcttcctgtttggtta |
308 |
Q |
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||||||| | |||||||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
14359896 |
acataaactggatattcactgaatcaaactatatccaaattgaaactaaataataaggattgcatttcaaaaccgaaccagatgtcttcctgtttggtta |
14359995 |
T |
|
| Q |
309 |
tgtcaaaccagtttccaaactgtatttaaaaccaggtttcttctttgatattttgtnnnnnnnttgtccatgacaagcacgctggaaacaaacattggaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
14359996 |
tgtcaaaccagtttccaaactgtatttaaaaccaggtttcttctttgatattttgtaaaaaaattgtccatgacaagcacgctgaaaacaaacattggaa |
14360095 |
T |
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| Q |
409 |
tgacaatttaccaaaagtaatgttctgatgcacagtcagcttgccttcaagaagaaagaatatttcagtttgcaaccaatctaatcaattgagtcttgtt |
508 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14360096 |
tgacaatttaccaaaagcaatgttctgatgcacagtcagcttgccttcaagaagcaagaatatttcagtttgcaaccaatctaatcaattgagtcttgtt |
14360195 |
T |
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| Q |
509 |
agtcaattttatattctcagtacaagattgaaaattatatcagtcatttcagcagtaaaacaacaacatattggttccatatcctt |
594 |
Q |
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||||||||||| ||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14360196 |
tgtcaattttatcttcccagtactagattgaaaattgtatcggtcatttcagcagtaaaacgacaacatattggttccaaatcctt |
14360281 |
T |
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