View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_high_25 (Length: 234)
Name: NF18306_high_25
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 39229902 - 39230131
Alignment:
| Q |
1 |
ttttgaaagttgctttattcacttcaatcaattatgatagagcataatgatatttttgtttatctataggggatattgagtctatgccgtttattgaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229902 |
ttttgaaagttgctttattcacttcaatcaattatgatagagcataatgatatttttgtttatctataggggatattgagtctatgccgtttattgaggc |
39230001 |
T |
|
| Q |
101 |
tctacggcaattatcctttcaagtgggtatggcagcatcttttgctttttaactaactttagttatttttgtatatagataccccatgtacacgttttaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230002 |
tctacggcaattatcctttcaagtgggtatgacagcatcttttgctttttaactaactttagttatttttgtatatagataccccatgtacacgttttaa |
39230101 |
T |
|
| Q |
201 |
ctactacagagtctttgttc-actgttcat |
229 |
Q |
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|||||||||||||||||||| ||||||||| |
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| T |
39230102 |
ctactacagagtctttgttcaactgttcat |
39230131 |
T |
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