View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_high_26 (Length: 229)
Name: NF18306_high_26
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 2576459 - 2576237
Alignment:
| Q |
7 |
cattgtaccctattgttagttatagaaccaggtccatagttattaaattcaccataaaaaatagtgtctaatccaactgttccattccactctaaccaac |
106 |
Q |
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| T |
2576459 |
cattgtaccctattgttagttacagaaccaggtccatagttattaaattcaccatagaaaatagtgtctaatccaactgttccattccactctaaccaac |
2576360 |
T |
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| Q |
107 |
cagaaggttgaacaaaatcgccgatatatgattgcatataaactgttcttgaataaatcttccatggtctacctaagtaactcattgttgaatttaagtc |
206 |
Q |
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| T |
2576359 |
cagaaggttgaacaaaatcgccgatatatgattgcatataaactgttcttgaataaatcttccatggtctacctaagtaactcattgttgaatttaagtc |
2576260 |
T |
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| Q |
207 |
attagccaaatcttgtgccgcat |
229 |
Q |
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| T |
2576259 |
attagccaaatcttgtgccgcat |
2576237 |
T |
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Back To:
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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 16607925 - 16608118
Alignment:
| Q |
7 |
cattgtaccctattgttagttatagaaccaggtccatagttattaaattcaccataaaaaatagtgtctaatccaactgttccattccactctaaccaac |
106 |
Q |
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|||||||||||||| | |||||||| |||||||||||| |||| ||| ||||||||||| | || ||||| ||||||||||||||||| |||||||| | |
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| T |
16607925 |
cattgtaccctattatgagttatagcaccaggtccataattatcaaactcaccataaaatagtgtatctaacccaactgttccattccattctaaccatc |
16608024 |
T |
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| Q |
107 |
cagaaggttgaacaaaatcgccgatatatgattgcatataaactgttcttgaataaatcttccatggtctacctaagtaactcattgttgaatt |
200 |
Q |
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| T |
16608025 |
cagaaggttgaattaaatcaccaatatatgattgcaaataaacagtccttgaatacactttccatggtcttcctaagtaattcttagttgaatt |
16608118 |
T |
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