View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_high_3 (Length: 590)
Name: NF18306_high_3
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 33556456 - 33556141
Alignment:
| Q |
16 |
cataggtgtggtgtttatactcaagttgtttggaggaagagtgttgaacttgggtgtgctcaaactacttgtggtaaggaagatactagtttgagtattt |
115 |
Q |
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| T |
33556456 |
cataggtgtggtgtttatactcaagttgtttggaggaagagtgttgaacttgggtgtgctcaaactacttgtggtaaggaagatactagtttgagtattt |
33556357 |
T |
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| Q |
116 |
gtttctattatccacctgggaattatgttggagagagtccttactgaaaattgttattgtgattgtaatgttgatgtttctattagtgttgatctgcttg |
215 |
Q |
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| T |
33556356 |
gtttctattatccacctgggaattatgttggagagagtccttactgaaaattgttgttgtgattgtaatgttgatgtttctattagtgttgatctgcttg |
33556257 |
T |
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| Q |
216 |
atttggttctgatctttcatgcaagtgtaacttttcaaattgataatttctagnnnnnnnnnnnnnnnnnnnncttactttacagatcttgatctgtcat |
315 |
Q |
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| T |
33556256 |
atttggttctgatctttcatgcaagtgtaacttttcaaattgataatttctagtaataaataataataataatcttactttacagatcttgatctgtcat |
33556157 |
T |
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| Q |
316 |
acacacaaactagatc |
331 |
Q |
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| T |
33556156 |
acacacaaactagatc |
33556141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 392 - 575
Target Start/End: Complemental strand, 33556085 - 33555902
Alignment:
| Q |
392 |
gtgtgtatgtttggacaagggctagtcaattataatttcaattttgtggaattgatttttgttaaaattaagtttgatatgaagtaatctatgtatgaat |
491 |
Q |
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| T |
33556085 |
gtgtgtatgtttggacaagggctagtcaattataatttcaattttgtggaattgatttttgttaaaattaagtttgatatgaagtaatctatgtatgaat |
33555986 |
T |
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| Q |
492 |
ggtttttactttaactagtttatgtgaagtgattttatcaaattcatgtttcaaaagtaaaataaattttcatacatagttatt |
575 |
Q |
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| T |
33555985 |
ggtttttactttaactagtttatgtgaagtgattttatcaaattcatgtttcaaaagtaaaataaattttcatacatagttatt |
33555902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 7013373 - 7013427
Alignment:
| Q |
101 |
ctagtttgagtatttgtttctattatccacctgggaattatgttggagagagtcc |
155 |
Q |
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| T |
7013373 |
ctagtttgactatttgtttctatgatccacctggtaatgttattggagagagtcc |
7013427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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