View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_high_4 (Length: 533)
Name: NF18306_high_4
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 36287659 - 36288177
Alignment:
| Q |
1 |
cttaggaaagacaatagagtttttatcggccaacatggtgaaagaaacggtcaaaaaacaaggtcaaaattgacgagaacatcaaaagaaaaccgtcgtt |
100 |
Q |
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| T |
36287659 |
cttaggaaagacaatagagtttttatcggccaacatggtgaaagaaacggtcaaaat------------ttgacgaggacatcaaaagaaaatcgtcgtt |
36287746 |
T |
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| Q |
101 |
ggtaaaaatgtgccgcttaatcagcttcacagaaaacatgtttaaatggtcaagatattcataagttcaaaaacccatacctaattttcgaaccaaactt |
200 |
Q |
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| T |
36287747 |
ggcaaaaatgtgccgcttaatcagcttcacggaaaacatgttcaaatggtcaaagtattcataagttcaaaaacccatacctaatgttcgaaccaaactt |
36287846 |
T |
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| Q |
201 |
atgcgggttatatcatattcgatcgtgttcaactttgatcgtcaaattcgtagatcgacgcacacccatgaacaccccacaaaggaataa-tgatccaac |
299 |
Q |
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| T |
36287847 |
atgcgggttatatcatattcgatcgtgttcaactttgatcgtcaaattcgtggatcgacccacacccatgaacaccccacaaaggaaaaaatgatccaac |
36287946 |
T |
|
| Q |
300 |
ttttgaaattaagcacttaatttttctttttaaatagtgaaaattgatggcgcccaatagagcattattatgctccaaaacataaacacaaatacaaaca |
399 |
Q |
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| T |
36287947 |
ttttgaaattaagcacttaatttttctttttaaatagtgaaaattgatggcgcccaatagagcattattatgctccaaaacataaacacaaatacaaaca |
36288046 |
T |
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| Q |
400 |
cttgtgtgttggagtgtaccccacatgagtcagaaagacaggagttttatgcagctttcattcactgcccatttctctctcgtgaaggggatgagagtgc |
499 |
Q |
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| T |
36288047 |
cttgtgtgttggagtgtaccccacatgagtcagaaagacaggagttttatgcagctttcattcactgcccatttctctctcgtgaaggggatgagagtgc |
36288146 |
T |
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| Q |
500 |
ctgcccactatttcctttccttcccaataca |
530 |
Q |
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| T |
36288147 |
ctgcccactatttcctttccttcccaataca |
36288177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 47883517 - 47883456
Alignment:
| Q |
234 |
tttgatcgtcaaattcgtagatcgacgcacacccatgaaca-ccccacaaaggaataatgat |
294 |
Q |
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| T |
47883517 |
tttgatcgtcaaatttgcaggtcgacacacacccatgaacatcctcaaaaaggaataatgat |
47883456 |
T |
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