View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_11 (Length: 390)
Name: NF18306_low_11
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 10065374 - 10065735
Alignment:
| Q |
12 |
caaaggtgaaaaaacatatcaagccttgcctgaaagtgtgttggagttgttttctgttaataagacgtcgaaattgggaagcaacaatcttcaagtcatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065374 |
caaaggtgaaaaaacatatcaagccttgcctgaaagtgtgttggagttgttttctgttaataagacgtcgaaattgggaagcaacaatcttcaagtcatc |
10065473 |
T |
|
| Q |
112 |
atgcattagagcaaaagcttcaacttccgtaatagtttcaactgtactagttgaaataggtaagtttgaagaggttgtaggatccaaggcccatgttaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065474 |
atgcattagagcaaaagcttcaacttccgtaatagtttcaactgtactagttgaaataggtaagtttgaagaggttgtaggatccaaggcccatgttaga |
10065573 |
T |
|
| Q |
212 |
agctcctctccacaaaaatcaccagccttgagttcggtcgagttaaagaaaccagttcttccaccatttgtcgtggcagtcttaagttttccgcgcatga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10065574 |
agctcctctccacaaaaatcaccagccttgagttcggtcgagttaaagaaaccagttcttccaccatttgtcgtggcagtcttaagttttccgcgcatga |
10065673 |
T |
|
| Q |
312 |
tgaagagcatttcgtccactggatcaccttcacgaacaacgaaacttttctcggtataaagg |
373 |
Q |
| |
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| T |
10065674 |
tgaagagcatttcgtccactggatcaccttcacgaacaacgaaacttttctcggtataaagg |
10065735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 27 - 282
Target Start/End: Complemental strand, 48466506 - 48466251
Alignment:
| Q |
27 |
atatcaagccttgcctgaaagtgtgttggagttgttttctgttaataagacgtcgaaattgggaagcaacaatcttcaagtcatcatgcattagagcaaa |
126 |
Q |
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|||||||||| | |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| ||||||||||||| | | || ||||| |
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| T |
48466506 |
atatcaagccatacctgaaagtgtgttggagttgtttgctgttgataagacgtctaaattgggaagcaacaaacttcaagtcatcagccttgagtgcaaa |
48466407 |
T |
|
| Q |
127 |
agcttcaacttccgtaatagtttcaactgtactagttgaaataggtaagtttgaagaggttgtaggatccaaggcccatgttagaagctcctctccacaa |
226 |
Q |
| |
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||||||||||| | |||||||| ||||| ||||||||| |||||| || || |||| | |||||||| |||||||||| ||| |||||||||||| |
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| T |
48466406 |
tgcttcaacttctgatatagtttctactgttctagttgaagtaggtagattcgaggaggagtttggatccaaagcccatgttaaaagttcctctccacaa |
48466307 |
T |
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| Q |
227 |
aaatcaccagccttgagttcggtcgagttaaagaaaccagttcttccaccatttgt |
282 |
Q |
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|||||||||| | | || ||||| |||||||||||||||||||||||||| |
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| T |
48466306 |
aaatcaccaggcattagaaataatgagttgaagaaaccagttcttccaccatttgt |
48466251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 350
Target Start/End: Complemental strand, 41395825 - 41395665
Alignment:
| Q |
190 |
aggatccaaggcccatgttagaagctcctctccacaaaaatcaccagccttgagttcggtcgagttaaagaaaccagttcttccaccatttgtcgtggca |
289 |
Q |
| |
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|||||| || |||||||| ||||||||||||||||| || |||||||||||||| | ||||| |||||||| ||||||||||| ||||| || | |
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| T |
41395825 |
aggatctaatgcccatgtgagaagctcctctccacagaagtcaccagccttgaggtattcagagttgaagaaacctgttcttccaccgtttgttgtcacg |
41395726 |
T |
|
| Q |
290 |
gtcttaagttttccgcgcatgatgaagagcatttcgtccactggatcaccttcacgaacaa |
350 |
Q |
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||| | |||||||||||| ||||||||||| || || || ||||| ||||| ||||||| |
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| T |
41395725 |
gtcaacaattttccgcgcattatgaagagcatctcatcaacaggatctccttcgcgaacaa |
41395665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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