View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_12 (Length: 381)
Name: NF18306_low_12
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Original strand, 40286457 - 40286814
Alignment:
| Q |
17 |
aagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatataacaagtcgtgtttccaacgactgttcactg |
116 |
Q |
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| T |
40286457 |
aagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatacaacaagtcgtgtttccaacggctgttcacta |
40286556 |
T |
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| Q |
117 |
aaattgtaaagattagaacattcatgaataggaagggggaactgagaggaatccatcagttaaggaattatgctcatgctgagaagattgtcattctaga |
216 |
Q |
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| T |
40286557 |
aaattgtaaagattataacgttcatgattaggaagggggaactgagaggaatccatcagttaaggaattatgctcatgctgagaagattgtcattctaga |
40286656 |
T |
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| Q |
217 |
ttcttcgcgaataaattcttctacttgtttttgaatgcatgattttcattaatcaatgaacgttgattgaacaaaaactccaaattcaaagcaaaatctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286657 |
ttcttcgcgaataaattcttctacttgtttttgaatgcatgattttcattaatcaatgaacgttgattgaacaaaaactccaaattcaaagcaaaatctg |
40286756 |
T |
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| Q |
317 |
tgactgcatatttgtataagtgatgcactttctgtctttttatcaaaaatttcatctc |
374 |
Q |
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| T |
40286757 |
tgactgcatatttttataagtgatgcactttctgtctttttatcaaaaacttcatctc |
40286814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 40456303 - 40455989
Alignment:
| Q |
17 |
aagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatataacaagtcgtgtttccaacgactgttcactg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
40456303 |
aagtttctcaagttgaaaagctaaagtgtatattaaggtagctcatggcaagttatatgcttgcaatacaacaagtcgtgtttccaacggctgttcacta |
40456204 |
T |
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| Q |
117 |
aaattgtaaagattagaacattcatgaataggaagggggaactgagaggaatccatcagttaaggaattatgctcatgctgagaagattgtcattctaga |
216 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456203 |
aaattgtaaagattataacgttcatgaataggaagggggaactgagaggaatccatcagttaaggaattatgctcatgctgagaagattgtcattctaga |
40456104 |
T |
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| Q |
217 |
ttcttcgcgaataaattcttctacttgtttttgaatgcatgattttcattaatcaatgaacgttgattgaacaaaaactccaaattcaaagcaaaatctg |
316 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||||| |||||||||||||||||||||| |||||||| |
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| T |
40456103 |
ttcttcgcgaataaattcttctacttgtttttggatgtatgattttgattgatcaatgaatgttgatggaacaaaaactccaaattcaaaacaaaatctt |
40456004 |
T |
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| Q |
317 |
tgactgcatatttgt |
331 |
Q |
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| T |
40456003 |
ttactgcatatttgt |
40455989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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