View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_14 (Length: 349)
Name: NF18306_low_14
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 64 - 349
Target Start/End: Complemental strand, 41969573 - 41969288
Alignment:
| Q |
64 |
gatggaacacctcccttaattttcgaattctattgttgaataaatcaaacacatcaaattctccaagtccaaccttagagtaagtccaaccatatattga |
163 |
Q |
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| T |
41969573 |
gatggaacgcctcccttaattttcgaattctattgttgaataaatcaaacacatcaaattctccaagtccaaccttagagtaagtccaaccatatattga |
41969474 |
T |
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| Q |
164 |
gctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgtt |
263 |
Q |
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| T |
41969473 |
gctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaaatgctataaatacgtaactcaacgtt |
41969374 |
T |
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| Q |
264 |
tcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttc |
349 |
Q |
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| T |
41969373 |
tcttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataacatcaatatgctcttc |
41969288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 145 - 349
Target Start/End: Complemental strand, 1236555 - 1236348
Alignment:
| Q |
145 |
aagtccaaccatatattgagctaaaggtggagctaggtggatctttcatcactaaaatagagccaccctttcatagattcagttcaagtagaa-atgcta |
243 |
Q |
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| T |
1236555 |
aagtccaaccatagattcagctaaaggtggctctaggtggatctttcatcactaaaatagagcca-cctttcatagattcagttcatgtagaatttgcta |
1236457 |
T |
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| Q |
244 |
taaatacgtaactcaac---gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataacatcaat |
340 |
Q |
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| T |
1236456 |
taaatacgtaactcaacaattcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataacatcaat |
1236357 |
T |
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| Q |
341 |
atgctcttc |
349 |
Q |
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| T |
1236356 |
atgctcttc |
1236348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 1236618 - 1236577
Alignment:
| Q |
72 |
acctcccttaattttcgaattctattgttgaataaatcaaac |
113 |
Q |
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| T |
1236618 |
acctcccttaattttcgaatgctattgttgaattaatcaaac |
1236577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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