View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_16 (Length: 316)
Name: NF18306_low_16
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 5375762 - 5375462
Alignment:
| Q |
16 |
gacatgacatggaagttcctgatataatgttgaaattcacgtgcctcttatcaagagctaagccggttggaccaactgcaccggtccaaccggctaaaat |
115 |
Q |
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| T |
5375762 |
gacatgacatggaagttcccgatataatgttgaaattcacgtgcctcttatcaagagctaagccggttggaccaactgcaccggtccaaccggctaaaat |
5375663 |
T |
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| Q |
116 |
gtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaaggttgaact |
215 |
Q |
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| T |
5375662 |
gtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaaggttgaact |
5375563 |
T |
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| Q |
216 |
tgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaaaacagtgcttgatttttgaccctatgcttctg |
315 |
Q |
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| T |
5375562 |
tgtaagtgtgtgcccccaaaaacaagtttagctcttggatttttcgtagtaaaaacgtagtcttttaaaacagtgcttgatttttgacccaatgctgctg |
5375463 |
T |
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| Q |
316 |
c |
316 |
Q |
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| T |
5375462 |
c |
5375462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 47366904 - 47367010
Alignment:
| Q |
108 |
gctaaaatgtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaag |
207 |
Q |
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| T |
47366904 |
gctagaatgttgactcctggagctatcaggtcgggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatg |
47367003 |
T |
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| Q |
208 |
gttgaac |
214 |
Q |
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| T |
47367004 |
gttgaac |
47367010 |
T |
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