View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18306_low_19 (Length: 275)
Name: NF18306_low_19
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18306_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9909608 - 9909876
Alignment:
| Q |
1 |
tacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaa |
100 |
Q |
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| T |
9909608 |
tacttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaa |
9909707 |
T |
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| Q |
101 |
attagtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatcaaa |
200 |
Q |
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| T |
9909708 |
attagtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatggagggattgttgcagttctaagtatcaaa |
9909807 |
T |
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| Q |
201 |
gacaacatagttttatctatggtgaagaggatgatcatgatattagcaaccaccatcctttcatctcac |
269 |
Q |
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| T |
9909808 |
gacaacatagttttatctatggtgaagaggatgatcatgatattagtaaccaccatcctttcttctcac |
9909876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 27091391 - 27091222
Alignment:
| Q |
4 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
103 |
Q |
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| T |
27091391 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27091292 |
T |
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| Q |
104 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
173 |
Q |
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| T |
27091291 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27091222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 27186910 - 27187079
Alignment:
| Q |
4 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
103 |
Q |
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| T |
27186910 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27187009 |
T |
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| Q |
104 |
agtgacttggaaccaatagagattgctgagatgattgaagaagagatatcaactatagttccaacatgga |
173 |
Q |
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| T |
27187010 |
aatcacttggaaccattaaagattgctgcaatgatagataatgagatatcaactttatttccaacttgga |
27187079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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