View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18306_low_20 (Length: 266)

Name: NF18306_low_20
Description: NF18306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18306_low_20
NF18306_low_20
[»] chr4 (13 HSPs)
chr4 (170-253)||(49763934-49764017)
chr4 (17-105)||(49763781-49763869)
chr4 (18-57)||(33530816-33530855)
chr4 (16-55)||(7272542-7272581)
chr4 (17-72)||(44568226-44568281)
chr4 (19-57)||(10042427-10042465)
chr4 (19-57)||(27103110-27103148)
chr4 (18-55)||(2771061-2771098)
chr4 (18-54)||(10402467-10402503)
chr4 (29-57)||(31016359-31016387)
chr4 (17-72)||(36802148-36802201)
chr4 (17-57)||(42395250-42395290)
chr4 (17-53)||(51777871-51777907)
[»] chr5 (6 HSPs)
chr5 (17-58)||(16745103-16745144)
chr5 (18-57)||(36735894-36735933)
chr5 (17-57)||(19985523-19985563)
chr5 (17-54)||(34730017-34730054)
chr5 (17-57)||(6558824-6558864)
chr5 (17-57)||(32392133-32392173)
[»] chr2 (4 HSPs)
chr2 (17-55)||(28441487-28441525)
chr2 (18-57)||(40363079-40363118)
chr2 (17-58)||(13975148-13975189)
chr2 (18-54)||(40931162-40931198)
[»] chr7 (7 HSPs)
chr7 (18-55)||(31191608-31191645)
chr7 (17-58)||(46243310-46243351)
chr7 (18-57)||(9497989-9498028)
chr7 (18-57)||(10690870-10690909)
chr7 (18-57)||(30806138-30806177)
chr7 (18-56)||(21875636-21875674)
chr7 (18-55)||(3392492-3392529)
[»] chr3 (4 HSPs)
chr3 (18-54)||(48546199-48546235)
chr3 (19-57)||(31586970-31587008)
chr3 (18-55)||(30245546-30245583)
chr3 (17-57)||(34847566-34847606)
[»] chr1 (5 HSPs)
chr1 (18-54)||(14349670-14349706)
chr1 (18-57)||(1604232-1604271)
chr1 (22-57)||(47478860-47478895)
chr1 (18-55)||(32119420-32119457)
chr1 (17-57)||(51933529-51933569)
[»] chr8 (5 HSPs)
chr8 (26-57)||(38337043-38337074)
chr8 (18-53)||(43600095-43600130)
chr8 (18-57)||(43656059-43656098)
chr8 (18-57)||(43980321-43980360)
chr8 (18-54)||(39712299-39712335)
[»] chr6 (4 HSPs)
chr6 (18-57)||(4089935-4089974)
chr6 (18-57)||(19892284-19892323)
chr6 (19-57)||(2500523-2500561)
chr6 (17-57)||(34040696-34040736)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 49763934 - 49764017
Alignment:
Q  170 caattgcaactacaaagaagttttgtctctcacttccccccttcgttctcgctgcctccaccaaactctctactttgcatcttc 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49763934 caattgcaactacaaagaagttttgtctctcacttccccccttcgttctcgctgcctccaccaaactctctactttgcatcttc 49764017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 49763781 - 49763869
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatcccttgagctaaactcacgacgatttctatcatatttatttaaatcatcagt 105  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49763781 agtttgaactccgacccctgcatataatatgcaatatcccttgagctaaactcacgacgatttctatcatatttatttaaatcatcagt 49763869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 33530855 - 33530816
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  33530855 gttcgaaccccgatccctacatataatatgcaatatccct 33530816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 7272581 - 7272542
Alignment:
Q  16 cagttcgaactccgatccctacatataatatgcaatatcc 55  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  7272581 cagttcgaactccggcccctacatataatatgcaatatcc 7272542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 44568226 - 44568281
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatcccttgagctaaactcacg 72  Q
    ||||||||| |||| |||| |||||||||||||||||| || ||| ||||||||||    
T  44568226 agttcgaaccccgacccctgcatataatatgcaatatctctagagttaaactcacg 44568281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 10042427 - 10042465
Alignment:
Q  19 ttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  10042427 ttcgaactccgactcctacatataatatgcaatatccct 10042465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 27103110 - 27103148
Alignment:
Q  19 ttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  27103110 ttcgaactccgacctctacatataatatgcaatatccct 27103148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2771098 - 2771061
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  2771098 gttcgaactccggtccctgcatataatatgcaatatcc 2771061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 10402503 - 10402467
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatc 54  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  10402503 gttcgaactccgacccctgcatataatatgcaatatc 10402467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 31016387 - 31016359
Alignment:
Q  29 gatccctacatataatatgcaatatccct 57  Q
    |||||||||||||||||||||||||||||    
T  31016387 gatccctacatataatatgcaatatccct 31016359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 36802201 - 36802148
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatcccttgagctaaactcacg 72  Q
    |||||||||||| | |||||||||||| ||||||||| |  |||||||||||||||    
T  36802201 agttcgaactccaacccctacatataaaatgcaatatac--tgagctaaactcacg 36802148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 42395290 - 42395250
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||| |||  ||||||||||||||||||||||||||    
T  42395290 agttcgaaccccggcccctacatataatatgcaatatccct 42395250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 51777907 - 51777871
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatat 53  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  51777907 agttcgaaccccgatccctgcatataatatgcaatat 51777871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 16745144 - 16745103
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccctt 58  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  16745144 agttcgaactccgacccctacatataatatgcaatatccctt 16745103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 36735933 - 36735894
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  36735933 gttcgaactccgacccctacatataatatgcaatatccct 36735894  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 19985563 - 19985523
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  19985563 agttcgaactccgatccctgcatatattatgcaatatccct 19985523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 34730017 - 34730054
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatc 54  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  34730017 agttcgaactccgacccctgcatataatatgcaatatc 34730054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 6558864 - 6558824
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  6558864 agttcgaaccccgacccctgcatataatatgcaatatccct 6558824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 32392133 - 32392173
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  32392133 agttcaaactctgatccctacgtataatatgcaatatccct 32392173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 28441487 - 28441525
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  28441487 agttcgaactccgacccctacatataatatgcaatatcc 28441525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 40363079 - 40363118
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  40363079 gttcgaaccccgacccctacatataatatgcaatatccct 40363118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 13975189 - 13975148
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccctt 58  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  13975189 agttcgaactccgacccctgcatataacatgcaatatccctt 13975148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 40931198 - 40931162
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatc 54  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  40931198 gttcaaactccggtccctacatataatatgcaatatc 40931162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 31191608 - 31191645
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31191608 gttcgaactccgatccctgcatataatatgcaatatcc 31191645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 46243351 - 46243310
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccctt 58  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  46243351 agttcgaactccgatccctatatataatatgcattatccctt 46243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 9498028 - 9497989
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  9498028 gttcgaaccccgacccctacatataatatgcaatatccct 9497989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 10690909 - 10690870
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  10690909 gttcgaactccgacccctgcatataatatgcaatatccct 10690870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 30806177 - 30806138
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  30806177 gttcgaactccgacccctgcatataatatgcaatatccct 30806138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 21875636 - 21875674
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccc 56  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  21875636 gttcgaactccgacccctgcatataatatgcaatatccc 21875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 3392529 - 3392492
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  3392529 gttcgaaccccgacccctacatataatatgcaatatcc 3392492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 48546235 - 48546199
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatc 54  Q
    |||||||| ||||||||||||||||||||||||||||    
T  48546235 gttcgaaccccgatccctacatataatatgcaatatc 48546199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 31587008 - 31586970
Alignment:
Q  19 ttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  31587008 ttcgaactccgacccctgcatataatatgcaatatccct 31586970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 30245546 - 30245583
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  30245546 gttcgaactccgttccctatatataatatgcaatatcc 30245583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34847606 - 34847566
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  34847606 agttcgaaccccgacccctgcatataatatgcaatatccct 34847566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 14349706 - 14349670
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatc 54  Q
    |||||||| ||||||||||||||||||||||||||||    
T  14349706 gttcgaaccccgatccctacatataatatgcaatatc 14349670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 1604232 - 1604271
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  1604232 gttcgaaccccgacccctacatataatatgcaatatccct 1604271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 47478860 - 47478895
Alignment:
Q  22 gaactccgatccctacatataatatgcaatatccct 57  Q
    |||| |||||||||||||||||||||||||||||||    
T  47478860 gaaccccgatccctacatataatatgcaatatccct 47478895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 32119457 - 32119420
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatcc 55  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  32119457 gttcgaaccccgacccctacatataatatgcaatatcc 32119420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 51933569 - 51933529
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  51933569 agttcgaaccccgattcctgcatataatatgcaatatccct 51933529  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 38337043 - 38337074
Alignment:
Q  26 tccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||||||||||||||||||||||||    
T  38337043 tccgatccctacatataatatgcaatatccct 38337074  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 43600130 - 43600095
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatat 53  Q
    ||||||||||||| ||||||||||||||||||||||    
T  43600130 gttcgaactccgacccctacatataatatgcaatat 43600095  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 43656098 - 43656059
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  43656098 gttcgaaccccgacccctacatataatatgcaatatccct 43656059  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 43980321 - 43980360
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  43980321 gttcgaaccccgatccctgcatataatatgcaatatccct 43980360  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 39712299 - 39712335
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatc 54  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  39712299 gttcgaattccgacccctacatataatatgcaatatc 39712335  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 4089935 - 4089974
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  4089935 gttcgaactccaatccctgcatataatatgcaatatccct 4089974  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 19892284 - 19892323
Alignment:
Q  18 gttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  19892284 gttcgaaccccgacccctacatataatatgcaatatccct 19892323  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 2500523 - 2500561
Alignment:
Q  19 ttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  2500523 ttcgaactccgacctctacatataatatgcaatatccct 2500561  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34040736 - 34040696
Alignment:
Q  17 agttcgaactccgatccctacatataatatgcaatatccct 57  Q
    |||||||||||||| || |||||||||||| ||||||||||    
T  34040736 agttcgaactccgacccttacatataatatacaatatccct 34040696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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